Recordings / M13Rec001 / Run
M13Rec001, run 590e35c0
Status done, stage done; requested by project lead; worker [not recorded]; started 2026-10-27 20:28 UTC, finished 2026-10-27 20:33 UTC, 328 s; signature 10e6d096
Stages
| Stage | Started | Seconds |
|---|---|---|
| [no stage log; run predates stage timing] | ||
Log
| Time | Agent | Action | Detail |
|---|---|---|---|
| 20:28:16 | runs | run started | {"planned_by": "openai:gpt-5.5", "recording_id": "55cb4aa3-6502-45a6-a14c-85cb676fe8c3", "run_id": "590e35c0-00b4-4ee4-a993-7843b0cb18e0"} |
| 20:33:45 | runs | signature written | {"criteria": "provisional", "holds": {"persistent_rotors": false, "persistent_rotors_fraction_superseded": false, "singularities": true}, "run_id": "590e35c0-00b4-4ee4-a993-7843b0cb18e0", "signature_id": "10e6d096-f4b8-496f-a010-b551f7fa07db"} |
Entries from the audit log for this run; new rows and stage changes arrive by realtime while the run is open (connecting).
Pipeline check
[no pipeline check stored for this run]
Inspector
This is an ex vivo optogenetic mouse whole-heart optical mapping recording associated with spiral-wave termination experiments. Use 1000 Hz: the linked paper states 64 × 64 camera acquisition at 1 kHz, and the deposit’s 64 × 55 frame size is consistent with a cropped version; this agrees with the frame rate already on record. The deposited movie is not truly raw camera output: depositor documentation and measurements indicate masking, temporal/spatial smoothing, and normalization. Polarity is robustly inverted, so depolarization appears as a downward deflection. Illumination was already on before frame 0 and turned off at frame 4977; the frame-3170 image step should be treated as a fluorescence baseline/rhythm-change event with provisional interpretation as spiral termination, not as light onset.
| Measurement | Value | Method, Caveat |
|---|---|---|
| SNR, median (p10–p90) | 32.5 (26.9–44.9) | assumes white noise; on temporally smoothed deposits noise is underestimated and SNR inflated |
| Mask coverage | 66.2%, 2332 of 3520 px | depositor NaN mask (frame 0) |
| Polarity | blocks 18, inverted True, blocks agreeing 18, median dvdt skew -4.419912338256836 | sign of median per-pixel skew of dV/dt, baseline-corrected (121 frames) |
| Drift / bleaching | baseline change -1.61, vs beat amplitude -1.12, slow range 3.33, trend, Spearman -0.489 | running median (927 frames) of the tissue-mean raw signal; steps from events (light, rhythm change) and depositor normalization or drift removal change or erase the baseline; bleaching cannot be separated from them here |
| Prior processing | negative values, nan mask all frames, temporal smoothing, spatial smoothing | deposit checks |
| Dominant cycle by block, frames | 0–1000: 66.7, 1000–2000: 66.7, 2000–3000: 52.6, 3000–4000: 83.3, 4000–5000: 100.0, 5000–6000: 142.9, 6000–7000: 100.0, 7000–8000: 142.9, 8000–9000: 83.3 |
| Concern | Severity | Detail |
|---|---|---|
| Pre-deposit processing / raw-data label | warn | The README labels M13Rec001 as raw experimental data, but the notebook documents masking, spatial smoothing, temporal smoothing, and normalization with Python Analyser; prior_processing measurements support processed data. Analyses requiring raw photon counts or independent pixel noise would be misleading if this is treated as raw camera data. |
| Event interpretation at frame 3170 | warn | The image event at frame 3170 is a baseline_step only. The DAQ shows illumination began before frame 0 and ended at frame 4977, so treating frame 3170 as light onset would be wrong. The stored spiral-termination label is a provisional interpretation from timing relative to the paper, not a direct measurement. |
| Baseline and illumination artifact | warn | The publication reports blue stimulation light crosstalk causing an increase in fluorescence baseline and re-normalization by division to the recorded stimulation light signal; the recording also has a large slow baseline range and a baseline step. Analyses using absolute baseline or amplitude should account for illumination/crosstalk/normalization effects. |
| Provisional tool thresholds | info | Event detection, processing flags, SNR, rhythm, and reference-rate thresholds are provisional and not yet reviewed by a domain scientist; conclusions depending on them should be checked for critical analyses. |
| Event | Frame | Source | Method |
|---|---|---|---|
| illumination on | 0 ± 11 | acquisition log | midpoint threshold on DAQ channel 'led_trigger', mapped to frames via camera triggers |
| illumination off | 4977 ± 11 | acquisition log | midpoint threshold on DAQ channel 'led_trigger', mapped to frames via camera triggers |
| baseline step | 3170 ± 17 | image | consensus upward step in running-median baseline of tissue-mean raw signal |
Inspector report 2026-10-27 20:27 UTC, model openai:gpt-5.5, provisional. Per-pixel SNR is high by the provisional metric: median = 32.506531024253725, p10 = 26.87502130582481, p90 = 44.884363625066875 over 3000 frames. Because the deposit is documented and measured as temporally smoothed, the tool caveat applies: white-noise assumptions can underestimate noise and inflate SNR. The depositor NaN mask in frame 0 contains 2332 tissue pixels out of 3520 total pixels, coverage = 0.6625, with 1188 NaN pixels. Acquisition log detects illumination already on at the first deposited frame: led_trigger transition occurred before_first_frame, 23.0 frames before frame 0, reported as illumination_on at frame 0 with uncertainty 11 frames; photodiode agrees. Acquisition log detects illumination_off at frame 4977 with uncertainty 11 frames; photodiode agrees. Image analysis detects a baseline_step at frame 3170 with uncertainty 17 frames: this measurement only shows the tissue-mean fluorescence baseline changed, not illumination onset. A stored project-lead interpretation, citing Hussaini et al. 2023 Fig 2C, labels the frame-3170 step as “spiral termination under illumination”; the source caveat says the paper does not name M13Rec001 and the termination assignment is inferred from timing, so it should be treated as provisional interpretation, not a direct measurement. The stored image-based “illumination_on” at frame 3170 is contradicted by the DAQ led_trigger and photodiode, which show light already on from before frame 0 until frame 4977. The tissue-mean slow baseline changes substantially: baseline_start = 1.439404845237732, baseline_end = -0.17559432983398438, baseline_change = -1.6149991750717163, which is -1.1213198412261043 times the beat amplitude; slow_baseline_range = 3.3284222781658173 and monotonic_trend_spearman = -0.4894475048599732. The tool cautions that steps from events, rhythm change, depositor normalization, or drift removal affect the baseline, so bleaching cannot be separated here.
Range checks
| Metric | Segment | Value at Run Setting | Cited Range | Status |
|---|---|---|---|---|
| persistent rotor tracks | all | 3 count | none cited | unstable not reportable |
| dominant freq (Hz) | light off | 4.89 Hz | none cited | unstable not reportable |
| persistent rotors | light off | 0 count | none cited | no cited range |
| singularity frames fraction | light off | 0.05599 fraction of frames | none cited | unstable not reportable |
| persistent rotor count max | light off | 0 count | none cited | no cited range |
| dominant freq (Hz) | illuminated arrhythmia | 15.49 Hz | 18.75–20, checked 14.0625–25, 10.1371/journal.pcbi.1011660 | within range |
| persistent rotors | illuminated arrhythmia | 3 count | none cited | unstable not reportable |
| dominant freq (Hz) | illuminated after termination | 4.981 Hz | none cited | unstable not reportable |
| singularity frames fraction | illuminated arrhythmia | 0.4997 fraction of frames | none cited | no cited range |
| persistent rotors | illuminated after termination | 0 count | none cited | no cited range |
| persistent rotor count max | illuminated arrhythmia | 1 count | none cited | unstable not reportable |
| singularity frames fraction | illuminated after termination | 0.04483 fraction of frames | none cited | unstable not reportable |
| persistent rotor count max | illuminated after termination | 0 count | none cited | no cited range |
Compare with run bdcc4054
A: this run, code 586a5b6, None workers. B: run bdcc4054, 2026-10-27 20:04 UTC, code 701ee65, None workers. 458 stored values differ.
| File | A | B | Same | How |
|---|---|---|---|---|
| frames/voltage | [none] | [none] | [not comparable] | recorded sha256 |
| frames/phase | [none] | [none] | [not comparable] | recorded sha256 |
| frames/maps | [none] | [none] | [not comparable] | recorded sha256 |
| movie.mp4 | 7523541 | 2940361 | no | size in bytes only; frames not compared |
| Stored Value | A | B |
|---|---|---|
| metrics.amplitude_p99 | 2.7878506183624268 | 1.9413831233978271 |
| metrics.dominant_freq | 4.849441750310138 | 0.009444444444444445 |
| metrics.dominant_freq_unit | Hz | cycles/frame |
| metrics.min_rotor_frames | 65 | 52 |
| metrics.paired_singularity_frac | 0.08071748878923767 | 0.037037037037037035 |
| metrics.persistent_rotor_durations | length 3 | length 1 |
| metrics.persistent_rotor_durations[0].end | 408 | 3126 |
| metrics.persistent_rotor_durations[0].frames_in_segment | 75 | 78 |
| metrics.persistent_rotor_durations[0].lifetime_cycles | 1.15 | 1.5 |
| metrics.persistent_rotor_durations[0].lifetime_frames | 75 | 78 |
| metrics.persistent_rotor_durations[0].start | 334 | 3049 |
| metrics.persistent_rotor_frames_frac | 0.027404984775008457 | 0.043333333333333335 |
| metrics.persistent_rotor_lifetimes | length 3 | length 1 |
| metrics.persistent_rotor_lifetimes[0] | 103 | 78 |
| metrics.persistent_rotor_tracks | 3 | 1 |
| metrics.persistent_rotors | 3 | 1 |
| metrics.segments.after_step | [absent] | {'persistent_rotors': 0, 'singularity_count_max': 4, 'singularity_count_mean': 0.09469026548672567, 'singularity_frames_frac': 0.05663716814159292, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} |
| metrics.segments.before_step | [absent] | {'persistent_rotors': 1, 'singularity_count_max': 4, 'singularity_count_mean': 0.5656716417910448, 'singularity_frames_frac': 0.3970149253731343, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 3126, 'start': 3049, 'charge': -1, 'lifetime_cycles': 1.5, 'lifetime_frames': 78, 'frames_in_segment': 78}], 'persistent_rotor_frames_frac': 0.11641791044776119} |
| metrics.segments.illuminated_after_termination | {'persistent_rotors': 0, 'singularity_count_max': 9, 'singularity_count_mean': 0.11566131710016603, 'singularity_frames_frac': 0.0448256779192031, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| metrics.segments.illuminated_arrhythmia | {'persistent_rotors': 3, 'singularity_count_max': 5, 'singularity_count_mean': 0.7380471380471381, 'singularity_frames_frac': 0.49966329966329964, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 408, 'start': 334, 'charge': -1, 'lifetime_cycles': 1.15, 'lifetime_frames': 75, 'frames_in_segment': 75}, {'end': 735, 'start': 671, 'charge': -1, 'lifetime_cycles': 1.0, 'lifetime_frames': 65, 'frames_in_segment': 65}, {'end': 1212, 'start': 1110, 'charge': -1, 'lifetime_cycles': 1.58, 'lifetime_frames': 103, 'frames_in_segment': 103}], 'persistent_rotor_frames_frac': 0.08181818181818182} | [absent] |
| metrics.segments.light_off | {'persistent_rotors': 0, 'singularity_count_max': 13, 'singularity_count_mean': 0.12176039119804401, 'singularity_frames_frac': 0.05599022004889975, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| metrics.singularity_count_max | 13 | 4 |
| metrics.singularity_count_mean | 0.32694259614300214 | 0.27 |
| metrics.singularity_frames_frac | 0.20232322093154392 | 0.18333333333333332 |
| metrics.tracks | 816 | 119 |
| filter_params.baseline_frames | 241 | 121 |
| filter_params.render.step | 4 | 2 |
| filter_params.spatial_sigma | 0.0 | 1.0 |
| filter_params.tracking.min_frames | 65 | 52 |
| filter_params.window.f0 | 200 | 2500 |
| filter_params.window.f1 | 9067 | 4300 |
| filter_params.window.frame_rate_hz | 1000 | [absent] |
| filter_params.window.frame_rate_source | {'ref': '10.1371/journal.pcbi.1011660', 'kind': 'publication', 'note': 'Camera frames are 64 x 64 in the paper; the deposit is 64 x 55 (cropped). Consistent with the DAQ: 10 samples per frame and a 5 s light pulse spanning 50,001 samples imply a 10 kHz DAQ.', 'quote': ' 775 ± 70nm bandpass filter (FF01–775/140-25, Semrock) and finally by the camera (EMCCD, Cascade 128+, Photometrics) with a spatial resolution of 64 × 64 pixels (133 μm per pixel) at 1 kHz. Optical Mapping recordings were acquired with software MultiRecorder and analysed with software PythonAnalyser (both developed by Research Group Biomedical Physics). Electrical s', 'section': 'Materials and methods: Optical mapping experiments on ventricular arrhythmia and its termination in the intact mouse heart'} | [absent] |
| filter_params.window.illumination | Acquisition log (LED trigger channel, provisional interpretation): illumination on over frames 200-4977 of the analysed frames 200-9067. | Acquisition log (0111210010.txt, LED trigger channel, provisional interpretation): illumination on throughout the analysed frames 2500-4300. |
| filter_params.window.segment_cycles_frames.after_step | [absent] | 141 |
| filter_params.window.segment_cycles_frames.before_step | [absent] | 52 |
| filter_params.window.segment_cycles_frames.illuminated_after_termination | 201 | [absent] |
| filter_params.window.segment_cycles_frames.illuminated_arrhythmia | 65 | [absent] |
| filter_params.window.segment_cycles_frames.light_off | 204 | [absent] |
| filter_params.window.segments | [{'name': 'illuminated_arrhythmia', 'label': 'illumination with arrhythmia', 'defined': [0, 3170], 'analysed': [200, 3170], 'citation': {'ref': '10.1371/journal.pcbi.1011660', 'quote': 't stimulus with LI = 3.44 μW/mm2 and PL = 5 s. Fig 2C shows a monophasic action potential (MAP) signal (in black) before, during, and after illumination. It shows the sinus rhythm returns after 3190 ms of illumination. Fig 2D presents a closer look at the MAP signal of the heart during the last few rotations of arrhythmia and the first few action potentials of sinus rhythm. Fig 2E illustrates a'}, 'defined_by': "project lead (not a domain scientist), following the paper's design", 'segment_id': '9ba31b07-6c35-4baf-9eb7-c5433889f987', 'end_event_id': '46c59a51-1a01-4aed-8021-db9a63720a1d', 'start_event_id': None, 'expected_persistent_rotors': 'present'}, {'name': 'illuminated_after_termination', 'label': 'illumination after termination', 'defined': [3170, 4977], 'analysed': [3170, 4977], 'citation': {'ref': '10.1371/journal.pcbi.1011660', 'quote': 't stimulus with LI = 3.44 μW/mm2 and PL = 5 s. Fig 2C shows a monophasic action potential (MAP) signal (in black) before, during, and after illumination. It shows the sinus rhythm returns after 3190 ms of illumination. Fig 2D presents a closer look at the MAP signal of the heart during the last few rotations of arrhythmia and the first few action potentials of sinus rhythm. Fig 2E illustrates a'}, 'defined_by': "project lead (not a domain scientist), following the paper's design", 'segment_id': 'a747e5e7-a3a6-44b4-b66e-5737c8ba7345', 'end_event_id': 'db2ad5f3-9b96-4ec1-9ccd-9c82c3425609', 'start_event_id': '46c59a51-1a01-4aed-8021-db9a63720a1d', 'expected_persistent_rotors': 'absent'}, {'name': 'light_off', 'label': 'light off', 'defined': [4977, 9267], 'analysed': [4977, 9067], 'citation': {'ref': '10.1371/journal.pcbi.1011660', 'quote': 't stimulus with LI = 3.44 μW/mm2 and PL = 5 s. Fig 2C shows a monophasic action potential (MAP) signal (in black) before, during, and after illumination. It shows the sinus rhythm returns after 3190 ms of illumination. Fig 2D presents a closer look at the MAP signal of the heart during the last few rotations of arrhythmia and the first few action potentials of sinus rhythm. Fig 2E illustrates a'}, 'defined_by': "project lead (not a domain scientist), following the paper's design", 'segment_id': 'd65c796e-74f0-4f90-ae86-7b528a9652a6', 'end_event_id': None, 'start_event_id': 'db2ad5f3-9b96-4ec1-9ccd-9c82c3425609', 'expected_persistent_rotors': 'absent'}] | {'after_step': [3170, 4300], 'before_step': [2500, 3170]} |
| filter_params.window.split_event | [absent] | {'kind': 'baseline_step', 'cause': 'not established', 'frame': 3170, 'source': 'image', 'event_id': '46c59a51-1a01-4aed-8021-db9a63720a1d', 'uncertainty_frames': 17} |
| sensitivity.findings.persistent_rotors.criterion | each 'present' segment: count >= 1; each 'absent' segment: count <= 0, at every setting | count(before) >= 1 and count(after) <= 0, with before='before_step', after='after_step', at every setting |
| sensitivity.findings.persistent_rotors.finding | persistent rotors as expected per segment: {'illuminated_arrhythmia': 'present', 'illuminated_after_termination': 'absent', 'light_off': 'absent'} | persistent rotors in 'before_step' but not (or less in) 'after_step' |
| sensitivity.findings.persistent_rotors_fraction_superseded.criterion | each 'present' segment: frac >= 0.1 and >= 2.0 x max frac over 'absent' segments (superseded: fraction rule applied to persistent rotors), at every setting | frac(before) >= 0.1 and >= 2.0 x frac(after) (superseded: fraction rule applied to persistent rotors), with before='before_step', after='after_step', at every setting |
| sensitivity.findings.persistent_rotors_fraction_superseded.finding | persistent rotors as expected per segment: {'illuminated_arrhythmia': 'present', 'illuminated_after_termination': 'absent', 'light_off': 'absent'} | persistent rotors in 'before_step' but not (or less in) 'after_step' |
| sensitivity.findings.singularities.criterion | each 'present' segment: frac >= 0.1 and >= 2.0 x max frac over 'absent' segments, at every setting | frac(before) >= 0.1 and >= 2.0 x frac(after), with before='before_step', after='after_step', at every setting |
| sensitivity.findings.singularities.finding | singularities as expected per segment: {'illuminated_arrhythmia': 'present', 'illuminated_after_termination': 'absent', 'light_off': 'absent'} | singularities in 'before_step' but not (or less in) 'after_step' |
| sensitivity.fixed.expect | {'light_off': 'absent', 'illuminated_arrhythmia': 'present', 'illuminated_after_termination': 'absent'} | [absent] |
| sensitivity.fixed.min_rotor_frames | 65 | 52 |
| sensitivity.fixed.segments.after_step | [absent] | [3170, 4300] |
| sensitivity.fixed.segments.before_step | [absent] | [2500, 3170] |
| sensitivity.fixed.segments.illuminated_after_termination | [3170, 4977] | [absent] |
| sensitivity.fixed.segments.illuminated_arrhythmia | [200, 3170] | [absent] |
| sensitivity.fixed.segments.light_off | [4977, 9067] | [absent] |
| sensitivity.fixed.window[0] | 200 | 2500 |
| sensitivity.fixed.window[1] | 9067 | 4300 |
| sensitivity.grid | length 12 | length 9 |
| sensitivity.grid[0].findings.persistent_rotors.absent | {'light_off': 0, 'illuminated_after_termination': 0} | [absent] |
| sensitivity.grid[0].findings.persistent_rotors.after | [absent] | 0 |
| sensitivity.grid[0].findings.persistent_rotors.before | [absent] | 1 |
| sensitivity.grid[0].findings.persistent_rotors.lifetimes_frames.after_step | [absent] | [] |
| sensitivity.grid[0].findings.persistent_rotors.lifetimes_frames.before_step | [absent] | [54] |
| sensitivity.grid[0].findings.persistent_rotors.lifetimes_frames.illuminated_after_termination | [] | [absent] |
| sensitivity.grid[0].findings.persistent_rotors.lifetimes_frames.illuminated_arrhythmia | [75, 103] | [absent] |
| sensitivity.grid[0].findings.persistent_rotors.lifetimes_frames.light_off | [] | [absent] |
| sensitivity.grid[0].findings.persistent_rotors.present | {'illuminated_arrhythmia': 2} | [absent] |
| sensitivity.grid[0].findings.persistent_rotors_fraction_superseded.absent | {'light_off': 0.0, 'illuminated_after_termination': 0.0} | [absent] |
| sensitivity.grid[0].findings.persistent_rotors_fraction_superseded.after | [absent] | 0.0 |
| sensitivity.grid[0].findings.persistent_rotors_fraction_superseded.before | [absent] | 0.08059701492537313 |
| sensitivity.grid[0].findings.persistent_rotors_fraction_superseded.present | {'illuminated_arrhythmia': 0.059932659932659935} | [absent] |
| sensitivity.grid[0].findings.persistent_rotors_fraction_superseded.ratio | [absent] | None |
| sensitivity.grid[0].findings.singularities.absent | {'light_off': 0.05476772616136919, 'illuminated_after_termination': 0.04427227448810182} | [absent] |
| sensitivity.grid[0].findings.singularities.after | [absent] | 0.0584070796460177 |
| sensitivity.grid[0].findings.singularities.before | [absent] | 0.3761194029850746 |
| sensitivity.grid[0].findings.singularities.present | {'illuminated_arrhythmia': 0.498989898989899} | [absent] |
| sensitivity.grid[0].findings.singularities.ratio | [absent] | 6.439620081411126 |
| sensitivity.grid[0].is_run_setting | False | [absent] |
| sensitivity.grid[0].persistent_rotor_tracks | 2 | 1 |
| sensitivity.grid[0].segments.after_step | [absent] | {'persistent_rotors': 0, 'singularity_count_max': 12, 'singularity_count_mean': 0.13008849557522123, 'singularity_frames_frac': 0.0584070796460177, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} |
| sensitivity.grid[0].segments.before_step | [absent] | {'persistent_rotors': 1, 'singularity_count_max': 4, 'singularity_count_mean': 0.5402985074626866, 'singularity_frames_frac': 0.3761194029850746, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 3046, 'start': 2993, 'charge': -1, 'lifetime_cycles': 1.04, 'lifetime_frames': 54, 'frames_in_segment': 54}], 'persistent_rotor_frames_frac': 0.08059701492537313} |
| sensitivity.grid[0].segments.illuminated_after_termination | {'persistent_rotors': 0, 'singularity_count_max': 8, 'singularity_count_mean': 0.10237963475373547, 'singularity_frames_frac': 0.04427227448810182, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.grid[0].segments.illuminated_arrhythmia | {'persistent_rotors': 2, 'singularity_count_max': 5, 'singularity_count_mean': 0.7356902356902357, 'singularity_frames_frac': 0.498989898989899, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 408, 'start': 334, 'charge': -1, 'lifetime_cycles': 1.15, 'lifetime_frames': 75, 'frames_in_segment': 75}, {'end': 1212, 'start': 1110, 'charge': -1, 'lifetime_cycles': 1.58, 'lifetime_frames': 103, 'frames_in_segment': 103}], 'persistent_rotor_frames_frac': 0.059932659932659935} | [absent] |
| sensitivity.grid[0].segments.light_off | {'persistent_rotors': 0, 'singularity_count_max': 11, 'singularity_count_mean': 0.10880195599022005, 'singularity_frames_frac': 0.05476772616136919, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.grid[1].findings.persistent_rotors.absent | {'light_off': 0, 'illuminated_after_termination': 0} | [absent] |
| sensitivity.grid[1].findings.persistent_rotors.after | [absent] | 0 |
| sensitivity.grid[1].findings.persistent_rotors.before | [absent] | 1 |
| sensitivity.grid[1].findings.persistent_rotors.lifetimes_frames.after_step | [absent] | [] |
| sensitivity.grid[1].findings.persistent_rotors.lifetimes_frames.before_step | [absent] | [54] |
| sensitivity.grid[1].findings.persistent_rotors.lifetimes_frames.illuminated_after_termination | [] | [absent] |
| sensitivity.grid[1].findings.persistent_rotors.lifetimes_frames.illuminated_arrhythmia | [75, 103] | [absent] |
| sensitivity.grid[1].findings.persistent_rotors.lifetimes_frames.light_off | [] | [absent] |
| sensitivity.grid[1].findings.persistent_rotors.present | {'illuminated_arrhythmia': 2} | [absent] |
| sensitivity.grid[1].findings.persistent_rotors_fraction_superseded.absent | {'light_off': 0.0, 'illuminated_after_termination': 0.0} | [absent] |
| sensitivity.grid[1].findings.persistent_rotors_fraction_superseded.after | [absent] | 0.0 |
| sensitivity.grid[1].findings.persistent_rotors_fraction_superseded.before | [absent] | 0.08059701492537313 |
| sensitivity.grid[1].findings.persistent_rotors_fraction_superseded.present | {'illuminated_arrhythmia': 0.059932659932659935} | [absent] |
| sensitivity.grid[1].findings.persistent_rotors_fraction_superseded.ratio | [absent] | None |
| sensitivity.grid[1].findings.singularities.absent | {'light_off': 0.05281173594132029, 'illuminated_after_termination': 0.04316546762589928} | [absent] |
| sensitivity.grid[1].findings.singularities.after | [absent] | 0.05663716814159292 |
| sensitivity.grid[1].findings.singularities.before | [absent] | 0.3701492537313433 |
| sensitivity.grid[1].findings.singularities.present | {'illuminated_arrhythmia': 0.49696969696969695} | [absent] |
| sensitivity.grid[1].findings.singularities.ratio | [absent] | 6.53544776119403 |
| sensitivity.grid[1].is_run_setting | False | [absent] |
| sensitivity.grid[1].persistent_rotor_tracks | 2 | 1 |
| sensitivity.grid[1].segments.after_step | [absent] | {'persistent_rotors': 0, 'singularity_count_max': 8, 'singularity_count_mean': 0.11150442477876106, 'singularity_frames_frac': 0.05663716814159292, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} |
| sensitivity.grid[1].segments.before_step | [absent] | {'persistent_rotors': 1, 'singularity_count_max': 4, 'singularity_count_mean': 0.5313432835820896, 'singularity_frames_frac': 0.3701492537313433, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 3046, 'start': 2993, 'charge': -1, 'lifetime_cycles': 1.04, 'lifetime_frames': 54, 'frames_in_segment': 54}], 'persistent_rotor_frames_frac': 0.08059701492537313} |
| sensitivity.grid[1].segments.illuminated_after_termination | {'persistent_rotors': 0, 'singularity_count_max': 10, 'singularity_count_mean': 0.09850581073602656, 'singularity_frames_frac': 0.04316546762589928, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.grid[1].segments.illuminated_arrhythmia | {'persistent_rotors': 2, 'singularity_count_max': 5, 'singularity_count_mean': 0.7292929292929293, 'singularity_frames_frac': 0.49696969696969695, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 408, 'start': 334, 'charge': -1, 'lifetime_cycles': 1.15, 'lifetime_frames': 75, 'frames_in_segment': 75}, {'end': 1212, 'start': 1110, 'charge': -1, 'lifetime_cycles': 1.58, 'lifetime_frames': 103, 'frames_in_segment': 103}], 'persistent_rotor_frames_frac': 0.059932659932659935} | [absent] |
| sensitivity.grid[1].segments.light_off | {'persistent_rotors': 0, 'singularity_count_max': 9, 'singularity_count_mean': 0.09559902200488997, 'singularity_frames_frac': 0.05281173594132029, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.grid[2].findings.persistent_rotors.absent | {'light_off': 0, 'illuminated_after_termination': 0} | [absent] |
| sensitivity.grid[2].findings.persistent_rotors.after | [absent] | 0 |
| sensitivity.grid[2].findings.persistent_rotors.before | [absent] | 1 |
| sensitivity.grid[2].findings.persistent_rotors.lifetimes_frames.after_step | [absent] | [] |
| sensitivity.grid[2].findings.persistent_rotors.lifetimes_frames.before_step | [absent] | [54] |
| sensitivity.grid[2].findings.persistent_rotors.lifetimes_frames.illuminated_after_termination | [] | [absent] |
| sensitivity.grid[2].findings.persistent_rotors.lifetimes_frames.illuminated_arrhythmia | [75, 103] | [absent] |
| sensitivity.grid[2].findings.persistent_rotors.lifetimes_frames.light_off | [] | [absent] |
| sensitivity.grid[2].findings.persistent_rotors.present | {'illuminated_arrhythmia': 2} | [absent] |
| sensitivity.grid[2].findings.persistent_rotors_fraction_superseded.absent | {'light_off': 0.0, 'illuminated_after_termination': 0.0} | [absent] |
| sensitivity.grid[2].findings.persistent_rotors_fraction_superseded.after | [absent] | 0.0 |
| sensitivity.grid[2].findings.persistent_rotors_fraction_superseded.before | [absent] | 0.08059701492537313 |
| sensitivity.grid[2].findings.persistent_rotors_fraction_superseded.present | {'illuminated_arrhythmia': 0.059932659932659935} | [absent] |
| sensitivity.grid[2].findings.persistent_rotors_fraction_superseded.ratio | [absent] | None |
| sensitivity.grid[2].findings.singularities.absent | {'light_off': 0.04792176039119805, 'illuminated_after_termination': 0.03984504703929164} | [absent] |
| sensitivity.grid[2].findings.singularities.after | [absent] | 0.05398230088495575 |
| sensitivity.grid[2].findings.singularities.before | [absent] | 0.35522388059701493 |
| sensitivity.grid[2].findings.singularities.present | {'illuminated_arrhythmia': 0.47878787878787876} | [absent] |
| sensitivity.grid[2].findings.singularities.ratio | [absent] | 6.58037680450208 |
| sensitivity.grid[2].is_run_setting | False | [absent] |
| sensitivity.grid[2].persistent_rotor_tracks | 2 | 1 |
| sensitivity.grid[2].segments.after_step | [absent] | {'persistent_rotors': 0, 'singularity_count_max': 6, 'singularity_count_mean': 0.09469026548672567, 'singularity_frames_frac': 0.05398230088495575, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} |
| sensitivity.grid[2].segments.before_step | [absent] | {'persistent_rotors': 1, 'singularity_count_max': 4, 'singularity_count_mean': 0.48955223880597015, 'singularity_frames_frac': 0.35522388059701493, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 3045, 'start': 2992, 'charge': -1, 'lifetime_cycles': 1.04, 'lifetime_frames': 54, 'frames_in_segment': 54}], 'persistent_rotor_frames_frac': 0.08059701492537313} |
| sensitivity.grid[2].segments.illuminated_after_termination | {'persistent_rotors': 0, 'singularity_count_max': 6, 'singularity_count_mean': 0.0752628666297731, 'singularity_frames_frac': 0.03984504703929164, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.grid[2].segments.illuminated_arrhythmia | {'persistent_rotors': 2, 'singularity_count_max': 5, 'singularity_count_mean': 0.6858585858585858, 'singularity_frames_frac': 0.47878787878787876, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 408, 'start': 334, 'charge': -1, 'lifetime_cycles': 1.15, 'lifetime_frames': 75, 'frames_in_segment': 75}, {'end': 1212, 'start': 1110, 'charge': -1, 'lifetime_cycles': 1.58, 'lifetime_frames': 103, 'frames_in_segment': 103}], 'persistent_rotor_frames_frac': 0.059932659932659935} | [absent] |
| sensitivity.grid[2].segments.light_off | {'persistent_rotors': 0, 'singularity_count_max': 6, 'singularity_count_mean': 0.0784841075794621, 'singularity_frames_frac': 0.04792176039119805, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.grid[3].baseline | light | default |
| sensitivity.grid[3].baseline_frames | 241 | 121 |
| sensitivity.grid[3].findings.persistent_rotors.absent | {'light_off': 0, 'illuminated_after_termination': 0} | [absent] |
| sensitivity.grid[3].findings.persistent_rotors.after | [absent] | 0 |
| sensitivity.grid[3].findings.persistent_rotors.before | [absent] | 1 |
| sensitivity.grid[3].findings.persistent_rotors.lifetimes_frames.after_step | [absent] | [] |
| sensitivity.grid[3].findings.persistent_rotors.lifetimes_frames.before_step | [absent] | [78] |
| sensitivity.grid[3].findings.persistent_rotors.lifetimes_frames.illuminated_after_termination | [] | [absent] |
| sensitivity.grid[3].findings.persistent_rotors.lifetimes_frames.illuminated_arrhythmia | [75, 65, 103] | [absent] |
| sensitivity.grid[3].findings.persistent_rotors.lifetimes_frames.light_off | [] | [absent] |
| sensitivity.grid[3].findings.persistent_rotors.present | {'illuminated_arrhythmia': 3} | [absent] |
| sensitivity.grid[3].findings.persistent_rotors_fraction_superseded.absent | {'light_off': 0.0, 'illuminated_after_termination': 0.0} | [absent] |
| sensitivity.grid[3].findings.persistent_rotors_fraction_superseded.after | [absent] | 0.0 |
| sensitivity.grid[3].findings.persistent_rotors_fraction_superseded.before | [absent] | 0.11641791044776119 |
| sensitivity.grid[3].findings.persistent_rotors_fraction_superseded.holds | False | True |
| sensitivity.grid[3].findings.persistent_rotors_fraction_superseded.label | does not hold (provisional) | holds (provisional) |
| sensitivity.grid[3].findings.persistent_rotors_fraction_superseded.present | {'illuminated_arrhythmia': 0.08181818181818182} | [absent] |
| sensitivity.grid[3].findings.persistent_rotors_fraction_superseded.ratio | [absent] | None |
| sensitivity.grid[3].findings.singularities.absent | {'light_off': 0.05599022004889975, 'illuminated_after_termination': 0.0448256779192031} | [absent] |
| sensitivity.grid[3].findings.singularities.after | [absent] | 0.05929203539823009 |
| sensitivity.grid[3].findings.singularities.before | [absent] | 0.4 |
| sensitivity.grid[3].findings.singularities.present | {'illuminated_arrhythmia': 0.49966329966329964} | [absent] |
| sensitivity.grid[3].findings.singularities.ratio | [absent] | 6.746268656716419 |
| sensitivity.grid[3].is_run_setting | True | [absent] |
| sensitivity.grid[3].persistent_rotor_tracks | 3 | 1 |
| sensitivity.grid[3].segments.after_step | [absent] | {'persistent_rotors': 0, 'singularity_count_max': 4, 'singularity_count_mean': 0.10442477876106195, 'singularity_frames_frac': 0.05929203539823009, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} |
| sensitivity.grid[3].segments.before_step | [absent] | {'persistent_rotors': 1, 'singularity_count_max': 4, 'singularity_count_mean': 0.5716417910447761, 'singularity_frames_frac': 0.4, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 3126, 'start': 3049, 'charge': -1, 'lifetime_cycles': 1.5, 'lifetime_frames': 78, 'frames_in_segment': 78}], 'persistent_rotor_frames_frac': 0.11641791044776119} |
| sensitivity.grid[3].segments.illuminated_after_termination | {'persistent_rotors': 0, 'singularity_count_max': 9, 'singularity_count_mean': 0.11566131710016603, 'singularity_frames_frac': 0.0448256779192031, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.grid[3].segments.illuminated_arrhythmia | {'persistent_rotors': 3, 'singularity_count_max': 5, 'singularity_count_mean': 0.7380471380471381, 'singularity_frames_frac': 0.49966329966329964, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 408, 'start': 334, 'charge': -1, 'lifetime_cycles': 1.15, 'lifetime_frames': 75, 'frames_in_segment': 75}, {'end': 735, 'start': 671, 'charge': -1, 'lifetime_cycles': 1.0, 'lifetime_frames': 65, 'frames_in_segment': 65}, {'end': 1212, 'start': 1110, 'charge': -1, 'lifetime_cycles': 1.58, 'lifetime_frames': 103, 'frames_in_segment': 103}], 'persistent_rotor_frames_frac': 0.08181818181818182} | [absent] |
| sensitivity.grid[3].segments.light_off | {'persistent_rotors': 0, 'singularity_count_max': 13, 'singularity_count_mean': 0.12176039119804401, 'singularity_frames_frac': 0.05599022004889975, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.grid[3].sigma | run | light |
| sensitivity.grid[3].spatial_sigma | 0.0 | 0.5 |
| sensitivity.grid[4].findings.persistent_rotors.absent | {'light_off': 0, 'illuminated_after_termination': 0} | [absent] |
| sensitivity.grid[4].findings.persistent_rotors.after | [absent] | 0 |
| sensitivity.grid[4].findings.persistent_rotors.before | [absent] | 1 |
| sensitivity.grid[4].findings.persistent_rotors.lifetimes_frames.after_step | [absent] | [] |
| sensitivity.grid[4].findings.persistent_rotors.lifetimes_frames.before_step | [absent] | [78] |
| sensitivity.grid[4].findings.persistent_rotors.lifetimes_frames.illuminated_after_termination | [] | [absent] |
| sensitivity.grid[4].findings.persistent_rotors.lifetimes_frames.illuminated_arrhythmia | [76, 65, 78] | [absent] |
| sensitivity.grid[4].findings.persistent_rotors.lifetimes_frames.light_off | [] | [absent] |
| sensitivity.grid[4].findings.persistent_rotors.present | {'illuminated_arrhythmia': 3} | [absent] |
| sensitivity.grid[4].findings.persistent_rotors_fraction_superseded.absent | {'light_off': 0.0, 'illuminated_after_termination': 0.0} | [absent] |
| sensitivity.grid[4].findings.persistent_rotors_fraction_superseded.after | [absent] | 0.0 |
| sensitivity.grid[4].findings.persistent_rotors_fraction_superseded.before | [absent] | 0.11641791044776119 |
| sensitivity.grid[4].findings.persistent_rotors_fraction_superseded.holds | False | True |
| sensitivity.grid[4].findings.persistent_rotors_fraction_superseded.label | does not hold (provisional) | holds (provisional) |
| sensitivity.grid[4].findings.persistent_rotors_fraction_superseded.present | {'illuminated_arrhythmia': 0.07373737373737374} | [absent] |
| sensitivity.grid[4].findings.persistent_rotors_fraction_superseded.ratio | [absent] | None |
| sensitivity.grid[4].findings.singularities.absent | {'light_off': 0.06821515892420538, 'illuminated_after_termination': 0.05201992252351965} | [absent] |
| sensitivity.grid[4].findings.singularities.after | [absent] | 0.05663716814159292 |
| sensitivity.grid[4].findings.singularities.before | [absent] | 0.3970149253731343 |
| sensitivity.grid[4].findings.singularities.present | {'illuminated_arrhythmia': 0.49326599326599324} | [absent] |
| sensitivity.grid[4].findings.singularities.ratio | [absent] | 7.009794776119403 |
| sensitivity.grid[4].is_run_setting | False | [absent] |
| sensitivity.grid[4].persistent_rotor_tracks | 3 | 1 |
| sensitivity.grid[4].segments.after_step | [absent] | {'persistent_rotors': 0, 'singularity_count_max': 4, 'singularity_count_mean': 0.09469026548672567, 'singularity_frames_frac': 0.05663716814159292, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} |
| sensitivity.grid[4].segments.before_step | [absent] | {'persistent_rotors': 1, 'singularity_count_max': 4, 'singularity_count_mean': 0.5656716417910448, 'singularity_frames_frac': 0.3970149253731343, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 3126, 'start': 3049, 'charge': -1, 'lifetime_cycles': 1.5, 'lifetime_frames': 78, 'frames_in_segment': 78}], 'persistent_rotor_frames_frac': 0.11641791044776119} |
| sensitivity.grid[4].segments.illuminated_after_termination | {'persistent_rotors': 0, 'singularity_count_max': 7, 'singularity_count_mean': 0.08909795240730492, 'singularity_frames_frac': 0.05201992252351965, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.grid[4].segments.illuminated_arrhythmia | {'persistent_rotors': 3, 'singularity_count_max': 5, 'singularity_count_mean': 0.7326599326599327, 'singularity_frames_frac': 0.49326599326599324, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 408, 'start': 333, 'charge': -1, 'lifetime_cycles': 1.17, 'lifetime_frames': 76, 'frames_in_segment': 76}, {'end': 733, 'start': 669, 'charge': -1, 'lifetime_cycles': 1.0, 'lifetime_frames': 65, 'frames_in_segment': 65}, {'end': 3126, 'start': 3049, 'charge': -1, 'lifetime_cycles': 1.2, 'lifetime_frames': 78, 'frames_in_segment': 78}], 'persistent_rotor_frames_frac': 0.07373737373737374} | [absent] |
| sensitivity.grid[4].segments.light_off | {'persistent_rotors': 0, 'singularity_count_max': 7, 'singularity_count_mean': 0.12298288508557458, 'singularity_frames_frac': 0.06821515892420538, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.grid[4].sigma | light | default |
| sensitivity.grid[4].spatial_sigma | 0.5 | 1.0 |
| sensitivity.grid[5].findings.persistent_rotors.absent | {'light_off': 0, 'illuminated_after_termination': 0} | [absent] |
| sensitivity.grid[5].findings.persistent_rotors.after | [absent] | 0 |
| sensitivity.grid[5].findings.persistent_rotors.before | [absent] | 1 |
| sensitivity.grid[5].findings.persistent_rotors.lifetimes_frames.after_step | [absent] | [] |
| sensitivity.grid[5].findings.persistent_rotors.lifetimes_frames.before_step | [absent] | [77] |
| sensitivity.grid[5].findings.persistent_rotors.lifetimes_frames.illuminated_after_termination | [] | [absent] |
| sensitivity.grid[5].findings.persistent_rotors.lifetimes_frames.illuminated_arrhythmia | [76, 78] | [absent] |
| sensitivity.grid[5].findings.persistent_rotors.lifetimes_frames.light_off | [] | [absent] |
| sensitivity.grid[5].findings.persistent_rotors.present | {'illuminated_arrhythmia': 2} | [absent] |
| sensitivity.grid[5].findings.persistent_rotors_fraction_superseded.absent | {'light_off': 0.0, 'illuminated_after_termination': 0.0} | [absent] |
| sensitivity.grid[5].findings.persistent_rotors_fraction_superseded.after | [absent] | 0.0 |
| sensitivity.grid[5].findings.persistent_rotors_fraction_superseded.before | [absent] | 0.11492537313432835 |
| sensitivity.grid[5].findings.persistent_rotors_fraction_superseded.holds | False | True |
| sensitivity.grid[5].findings.persistent_rotors_fraction_superseded.label | does not hold (provisional) | holds (provisional) |
| sensitivity.grid[5].findings.persistent_rotors_fraction_superseded.present | {'illuminated_arrhythmia': 0.05185185185185185} | [absent] |
| sensitivity.grid[5].findings.persistent_rotors_fraction_superseded.ratio | [absent] | None |
| sensitivity.grid[5].findings.singularities.absent | {'light_off': 0.06625916870415648, 'illuminated_after_termination': 0.04980630879911455} | [absent] |
| sensitivity.grid[5].findings.singularities.after | [absent] | 0.049557522123893805 |
| sensitivity.grid[5].findings.singularities.before | [absent] | 0.373134328358209 |
| sensitivity.grid[5].findings.singularities.present | {'illuminated_arrhythmia': 0.4888888888888889} | [absent] |
| sensitivity.grid[5].findings.singularities.ratio | [absent] | 7.529317697228145 |
| sensitivity.grid[5].is_run_setting | False | [absent] |
| sensitivity.grid[5].persistent_rotor_tracks | 2 | 1 |
| sensitivity.grid[5].segments.after_step | [absent] | {'persistent_rotors': 0, 'singularity_count_max': 4, 'singularity_count_mean': 0.07168141592920355, 'singularity_frames_frac': 0.049557522123893805, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} |
| sensitivity.grid[5].segments.before_step | [absent] | {'persistent_rotors': 1, 'singularity_count_max': 4, 'singularity_count_mean': 0.5238805970149254, 'singularity_frames_frac': 0.373134328358209, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 3125, 'start': 3049, 'charge': -1, 'lifetime_cycles': 1.48, 'lifetime_frames': 77, 'frames_in_segment': 77}], 'persistent_rotor_frames_frac': 0.11492537313432835} |
| sensitivity.grid[5].segments.illuminated_after_termination | {'persistent_rotors': 0, 'singularity_count_max': 5, 'singularity_count_mean': 0.08245711123408965, 'singularity_frames_frac': 0.04980630879911455, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.grid[5].segments.illuminated_arrhythmia | {'persistent_rotors': 2, 'singularity_count_max': 5, 'singularity_count_mean': 0.7235690235690235, 'singularity_frames_frac': 0.4888888888888889, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 408, 'start': 333, 'charge': -1, 'lifetime_cycles': 1.17, 'lifetime_frames': 76, 'frames_in_segment': 76}, {'end': 3126, 'start': 3049, 'charge': -1, 'lifetime_cycles': 1.2, 'lifetime_frames': 78, 'frames_in_segment': 78}], 'persistent_rotor_frames_frac': 0.05185185185185185} | [absent] |
| sensitivity.grid[5].segments.light_off | {'persistent_rotors': 0, 'singularity_count_max': 7, 'singularity_count_mean': 0.11100244498777506, 'singularity_frames_frac': 0.06625916870415648, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.grid[5].sigma | default | heavier |
| sensitivity.grid[5].spatial_sigma | 1.0 | 2.0 |
| sensitivity.grid[6].baseline | default | heavier |
| sensitivity.grid[6].baseline_frames | 121 | 81 |
| sensitivity.grid[6].findings.persistent_rotors.absent | {'light_off': 0, 'illuminated_after_termination': 0} | [absent] |
| sensitivity.grid[6].findings.persistent_rotors.after | [absent] | 0 |
| sensitivity.grid[6].findings.persistent_rotors.before | [absent] | 1 |
| sensitivity.grid[6].findings.persistent_rotors.lifetimes_frames.after_step | [absent] | [] |
| sensitivity.grid[6].findings.persistent_rotors.lifetimes_frames.before_step | [absent] | [138] |
| sensitivity.grid[6].findings.persistent_rotors.lifetimes_frames.illuminated_after_termination | [] | [absent] |
| sensitivity.grid[6].findings.persistent_rotors.lifetimes_frames.illuminated_arrhythmia | [75, 77] | [absent] |
| sensitivity.grid[6].findings.persistent_rotors.lifetimes_frames.light_off | [] | [absent] |
| sensitivity.grid[6].findings.persistent_rotors.present | {'illuminated_arrhythmia': 2} | [absent] |
| sensitivity.grid[6].findings.persistent_rotors_fraction_superseded.absent | {'light_off': 0.0, 'illuminated_after_termination': 0.0} | [absent] |
| sensitivity.grid[6].findings.persistent_rotors_fraction_superseded.after | [absent] | 0.0 |
| sensitivity.grid[6].findings.persistent_rotors_fraction_superseded.before | [absent] | 0.20597014925373133 |
| sensitivity.grid[6].findings.persistent_rotors_fraction_superseded.holds | False | True |
| sensitivity.grid[6].findings.persistent_rotors_fraction_superseded.label | does not hold (provisional) | holds (provisional) |
| sensitivity.grid[6].findings.persistent_rotors_fraction_superseded.present | {'illuminated_arrhythmia': 0.05117845117845118} | [absent] |
| sensitivity.grid[6].findings.persistent_rotors_fraction_superseded.ratio | [absent] | None |
| sensitivity.grid[6].findings.singularities.absent | {'light_off': 0.05965770171149144, 'illuminated_after_termination': 0.04427227448810182} | [absent] |
| sensitivity.grid[6].findings.singularities.after | [absent] | 0.05398230088495575 |
| sensitivity.grid[6].findings.singularities.before | [absent] | 0.39850746268656717 |
| sensitivity.grid[6].findings.singularities.present | {'illuminated_arrhythmia': 0.4744107744107744} | [absent] |
| sensitivity.grid[6].findings.singularities.ratio | [absent] | 7.382187423538047 |
| sensitivity.grid[6].is_run_setting | False | [absent] |
| sensitivity.grid[6].persistent_rotor_tracks | 2 | 1 |
| sensitivity.grid[6].segments.after_step | [absent] | {'persistent_rotors': 0, 'singularity_count_max': 7, 'singularity_count_mean': 0.09911504424778761, 'singularity_frames_frac': 0.05398230088495575, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} |
| sensitivity.grid[6].segments.before_step | [absent] | {'persistent_rotors': 1, 'singularity_count_max': 4, 'singularity_count_mean': 0.5283582089552239, 'singularity_frames_frac': 0.39850746268656717, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 3127, 'start': 2990, 'charge': -1, 'lifetime_cycles': 2.65, 'lifetime_frames': 138, 'frames_in_segment': 138}], 'persistent_rotor_frames_frac': 0.20597014925373133} |
| sensitivity.grid[6].segments.illuminated_after_termination | {'persistent_rotors': 0, 'singularity_count_max': 4, 'singularity_count_mean': 0.06419479800774765, 'singularity_frames_frac': 0.04427227448810182, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.grid[6].segments.illuminated_arrhythmia | {'persistent_rotors': 2, 'singularity_count_max': 4, 'singularity_count_mean': 0.6858585858585858, 'singularity_frames_frac': 0.4744107744107744, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 407, 'start': 333, 'charge': -1, 'lifetime_cycles': 1.15, 'lifetime_frames': 75, 'frames_in_segment': 75}, {'end': 3125, 'start': 3049, 'charge': -1, 'lifetime_cycles': 1.18, 'lifetime_frames': 77, 'frames_in_segment': 77}], 'persistent_rotor_frames_frac': 0.05117845117845118} | [absent] |
| sensitivity.grid[6].segments.light_off | {'persistent_rotors': 0, 'singularity_count_max': 5, 'singularity_count_mean': 0.08899755501222494, 'singularity_frames_frac': 0.05965770171149144, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.grid[6].sigma | heavier | light |
| sensitivity.grid[6].spatial_sigma | 2.0 | 0.5 |
| sensitivity.grid[7].baseline | default | heavier |
| sensitivity.grid[7].baseline_frames | 121 | 81 |
| sensitivity.grid[7].findings.persistent_rotors.absent | {'light_off': 0, 'illuminated_after_termination': 0} | [absent] |
| sensitivity.grid[7].findings.persistent_rotors.after | [absent] | 0 |
| sensitivity.grid[7].findings.persistent_rotors.before | [absent] | 1 |
| sensitivity.grid[7].findings.persistent_rotors.lifetimes_frames.after_step | [absent] | [] |
| sensitivity.grid[7].findings.persistent_rotors.lifetimes_frames.before_step | [absent] | [138] |
| sensitivity.grid[7].findings.persistent_rotors.lifetimes_frames.illuminated_after_termination | [] | [absent] |
| sensitivity.grid[7].findings.persistent_rotors.lifetimes_frames.illuminated_arrhythmia | [76, 65, 78] | [absent] |
| sensitivity.grid[7].findings.persistent_rotors.lifetimes_frames.light_off | [] | [absent] |
| sensitivity.grid[7].findings.persistent_rotors.present | {'illuminated_arrhythmia': 3} | [absent] |
| sensitivity.grid[7].findings.persistent_rotors_fraction_superseded.absent | {'light_off': 0.0, 'illuminated_after_termination': 0.0} | [absent] |
| sensitivity.grid[7].findings.persistent_rotors_fraction_superseded.after | [absent] | 0.0 |
| sensitivity.grid[7].findings.persistent_rotors_fraction_superseded.before | [absent] | 0.20597014925373133 |
| sensitivity.grid[7].findings.persistent_rotors_fraction_superseded.holds | False | True |
| sensitivity.grid[7].findings.persistent_rotors_fraction_superseded.label | does not hold (provisional) | holds (provisional) |
| sensitivity.grid[7].findings.persistent_rotors_fraction_superseded.present | {'illuminated_arrhythmia': 0.07373737373737374} | [absent] |
| sensitivity.grid[7].findings.persistent_rotors_fraction_superseded.ratio | [absent] | None |
| sensitivity.grid[7].findings.singularities.absent | {'light_off': 0.06821515892420538, 'illuminated_after_termination': 0.053126729385722195} | [absent] |
| sensitivity.grid[7].findings.singularities.after | [absent] | 0.05398230088495575 |
| sensitivity.grid[7].findings.singularities.before | [absent] | 0.3970149253731343 |
| sensitivity.grid[7].findings.singularities.present | {'illuminated_arrhythmia': 0.49292929292929294} | [absent] |
| sensitivity.grid[7].findings.singularities.ratio | [absent] | 7.354538781502324 |
| sensitivity.grid[7].is_run_setting | False | [absent] |
| sensitivity.grid[7].persistent_rotor_tracks | 3 | 1 |
| sensitivity.grid[7].segments.after_step | [absent] | {'persistent_rotors': 0, 'singularity_count_max': 6, 'singularity_count_mean': 0.09115044247787611, 'singularity_frames_frac': 0.05398230088495575, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} |
| sensitivity.grid[7].segments.before_step | [absent] | {'persistent_rotors': 1, 'singularity_count_max': 4, 'singularity_count_mean': 0.5268656716417911, 'singularity_frames_frac': 0.3970149253731343, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 3127, 'start': 2990, 'charge': -1, 'lifetime_cycles': 2.65, 'lifetime_frames': 138, 'frames_in_segment': 138}], 'persistent_rotor_frames_frac': 0.20597014925373133} |
| sensitivity.grid[7].segments.illuminated_after_termination | {'persistent_rotors': 0, 'singularity_count_max': 7, 'singularity_count_mean': 0.09407858328721638, 'singularity_frames_frac': 0.053126729385722195, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.grid[7].segments.illuminated_arrhythmia | {'persistent_rotors': 3, 'singularity_count_max': 5, 'singularity_count_mean': 0.7336700336700337, 'singularity_frames_frac': 0.49292929292929294, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 408, 'start': 333, 'charge': -1, 'lifetime_cycles': 1.17, 'lifetime_frames': 76, 'frames_in_segment': 76}, {'end': 733, 'start': 669, 'charge': -1, 'lifetime_cycles': 1.0, 'lifetime_frames': 65, 'frames_in_segment': 65}, {'end': 3126, 'start': 3049, 'charge': -1, 'lifetime_cycles': 1.2, 'lifetime_frames': 78, 'frames_in_segment': 78}], 'persistent_rotor_frames_frac': 0.07373737373737374} | [absent] |
| sensitivity.grid[7].segments.light_off | {'persistent_rotors': 0, 'singularity_count_max': 8, 'singularity_count_mean': 0.13227383863080686, 'singularity_frames_frac': 0.06821515892420538, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.grid[7].sigma | run | default |
| sensitivity.grid[7].spatial_sigma | 0.0 | 1.0 |
| sensitivity.grid[8].findings.persistent_rotors.absent | {'light_off': 0, 'illuminated_after_termination': 0} | [absent] |
| sensitivity.grid[8].findings.persistent_rotors.after | [absent] | 0 |
| sensitivity.grid[8].findings.persistent_rotors.before | [absent] | 1 |
| sensitivity.grid[8].findings.persistent_rotors.lifetimes_frames.after_step | [absent] | [] |
| sensitivity.grid[8].findings.persistent_rotors.lifetimes_frames.before_step | [absent] | [141] |
| sensitivity.grid[8].findings.persistent_rotors.lifetimes_frames.illuminated_after_termination | [] | [absent] |
| sensitivity.grid[8].findings.persistent_rotors.lifetimes_frames.illuminated_arrhythmia | [73, 66, 89, 138] | [absent] |
| sensitivity.grid[8].findings.persistent_rotors.lifetimes_frames.light_off | [] | [absent] |
| sensitivity.grid[8].findings.persistent_rotors.present | {'illuminated_arrhythmia': 4} | [absent] |
| sensitivity.grid[8].findings.persistent_rotors_fraction_superseded.absent | {'light_off': 0.0, 'illuminated_after_termination': 0.0} | [absent] |
| sensitivity.grid[8].findings.persistent_rotors_fraction_superseded.after | [absent] | 0.0 |
| sensitivity.grid[8].findings.persistent_rotors_fraction_superseded.before | [absent] | 0.21044776119402986 |
| sensitivity.grid[8].findings.persistent_rotors_fraction_superseded.present | {'illuminated_arrhythmia': 0.12323232323232323} | [absent] |
| sensitivity.grid[8].findings.persistent_rotors_fraction_superseded.ratio | [absent] | None |
| sensitivity.grid[8].findings.singularities.absent | {'light_off': 0.06405867970660147, 'illuminated_after_termination': 0.050359712230215826} | [absent] |
| sensitivity.grid[8].findings.singularities.after | [absent] | 0.04601769911504425 |
| sensitivity.grid[8].findings.singularities.before | [absent] | 0.3850746268656716 |
| sensitivity.grid[8].findings.singularities.present | {'illuminated_arrhythmia': 0.49292929292929294} | [absent] |
| sensitivity.grid[8].findings.singularities.ratio | [absent] | 8.36796785304248 |
| sensitivity.grid[8].is_run_setting | False | [absent] |
| sensitivity.grid[8].persistent_rotor_tracks | 4 | 1 |
| sensitivity.grid[8].segments.after_step | [absent] | {'persistent_rotors': 0, 'singularity_count_max': 6, 'singularity_count_mean': 0.06991150442477877, 'singularity_frames_frac': 0.04601769911504425, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} |
| sensitivity.grid[8].segments.before_step | [absent] | {'persistent_rotors': 1, 'singularity_count_max': 4, 'singularity_count_mean': 0.4955223880597015, 'singularity_frames_frac': 0.3850746268656716, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 3130, 'start': 2990, 'charge': -1, 'lifetime_cycles': 2.71, 'lifetime_frames': 141, 'frames_in_segment': 141}], 'persistent_rotor_frames_frac': 0.21044776119402986} |
| sensitivity.grid[8].segments.illuminated_after_termination | {'persistent_rotors': 0, 'singularity_count_max': 7, 'singularity_count_mean': 0.09131156613171001, 'singularity_frames_frac': 0.050359712230215826, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.grid[8].segments.illuminated_arrhythmia | {'persistent_rotors': 4, 'singularity_count_max': 6, 'singularity_count_mean': 0.6942760942760943, 'singularity_frames_frac': 0.49292929292929294, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 407, 'start': 335, 'charge': -1, 'lifetime_cycles': 1.12, 'lifetime_frames': 73, 'frames_in_segment': 73}, {'end': 737, 'start': 672, 'charge': -1, 'lifetime_cycles': 1.02, 'lifetime_frames': 66, 'frames_in_segment': 66}, {'end': 2439, 'start': 2351, 'charge': 1, 'lifetime_cycles': 1.37, 'lifetime_frames': 89, 'frames_in_segment': 89}, {'end': 3127, 'start': 2990, 'charge': -1, 'lifetime_cycles': 2.12, 'lifetime_frames': 138, 'frames_in_segment': 138}], 'persistent_rotor_frames_frac': 0.12323232323232323} | [absent] |
| sensitivity.grid[8].segments.light_off | {'persistent_rotors': 0, 'singularity_count_max': 8, 'singularity_count_mean': 0.11735941320293398, 'singularity_frames_frac': 0.06405867970660147, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.grid[8].sigma | light | heavier |
| sensitivity.grid[8].spatial_sigma | 0.5 | 2.0 |
| sensitivity.trackers[0].findings.persistent_rotors.absent | {'light_off': 0, 'illuminated_after_termination': 0} | [absent] |
| sensitivity.trackers[0].findings.persistent_rotors.after | [absent] | 0 |
| sensitivity.trackers[0].findings.persistent_rotors.before | [absent] | 0 |
| sensitivity.trackers[0].findings.persistent_rotors.lifetimes_frames.after_step | [absent] | [] |
| sensitivity.trackers[0].findings.persistent_rotors.lifetimes_frames.before_step | [absent] | [] |
| sensitivity.trackers[0].findings.persistent_rotors.lifetimes_frames.illuminated_after_termination | [] | [absent] |
| sensitivity.trackers[0].findings.persistent_rotors.lifetimes_frames.illuminated_arrhythmia | [] | [absent] |
| sensitivity.trackers[0].findings.persistent_rotors.lifetimes_frames.light_off | [] | [absent] |
| sensitivity.trackers[0].findings.persistent_rotors.present | {'illuminated_arrhythmia': 0} | [absent] |
| sensitivity.trackers[0].findings.persistent_rotors_fraction_superseded.absent | {'light_off': 0.0, 'illuminated_after_termination': 0.0} | [absent] |
| sensitivity.trackers[0].findings.persistent_rotors_fraction_superseded.after | [absent] | 0.0 |
| sensitivity.trackers[0].findings.persistent_rotors_fraction_superseded.before | [absent] | 0.0 |
| sensitivity.trackers[0].findings.persistent_rotors_fraction_superseded.present | {'illuminated_arrhythmia': 0.0} | [absent] |
| sensitivity.trackers[0].findings.persistent_rotors_fraction_superseded.ratio | [absent] | None |
| sensitivity.trackers[0].is_run_setting | False | [absent] |
| sensitivity.trackers[0].segments.after_step | [absent] | {'persistent_rotors': 0, 'singularity_count_max': 4, 'singularity_count_mean': 0.09469026548672567, 'singularity_frames_frac': 0.05663716814159292, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} |
| sensitivity.trackers[0].segments.before_step | [absent] | {'persistent_rotors': 0, 'singularity_count_max': 4, 'singularity_count_mean': 0.5656716417910448, 'singularity_frames_frac': 0.3970149253731343, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} |
| sensitivity.trackers[0].segments.illuminated_after_termination | {'persistent_rotors': 0, 'singularity_count_max': 9, 'singularity_count_mean': 0.11566131710016603, 'singularity_frames_frac': 0.0448256779192031, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.trackers[0].segments.illuminated_arrhythmia | {'persistent_rotors': 0, 'singularity_count_max': 5, 'singularity_count_mean': 0.7380471380471381, 'singularity_frames_frac': 0.49966329966329964, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.trackers[0].segments.light_off | {'persistent_rotors': 0, 'singularity_count_max': 13, 'singularity_count_mean': 0.12176039119804401, 'singularity_frames_frac': 0.05599022004889975, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.trackers[1].findings.persistent_rotors.absent | {'light_off': 0, 'illuminated_after_termination': 0} | [absent] |
| sensitivity.trackers[1].findings.persistent_rotors.after | [absent] | 0 |
| sensitivity.trackers[1].findings.persistent_rotors.before | [absent] | 1 |
| sensitivity.trackers[1].findings.persistent_rotors.lifetimes_frames.after_step | [absent] | [] |
| sensitivity.trackers[1].findings.persistent_rotors.lifetimes_frames.before_step | [absent] | [78] |
| sensitivity.trackers[1].findings.persistent_rotors.lifetimes_frames.illuminated_after_termination | [] | [absent] |
| sensitivity.trackers[1].findings.persistent_rotors.lifetimes_frames.illuminated_arrhythmia | [75, 65, 103] | [absent] |
| sensitivity.trackers[1].findings.persistent_rotors.lifetimes_frames.light_off | [] | [absent] |
| sensitivity.trackers[1].findings.persistent_rotors.present | {'illuminated_arrhythmia': 3} | [absent] |
| sensitivity.trackers[1].findings.persistent_rotors_fraction_superseded.absent | {'light_off': 0.0, 'illuminated_after_termination': 0.0} | [absent] |
| sensitivity.trackers[1].findings.persistent_rotors_fraction_superseded.after | [absent] | 0.0 |
| sensitivity.trackers[1].findings.persistent_rotors_fraction_superseded.before | [absent] | 0.11641791044776119 |
| sensitivity.trackers[1].findings.persistent_rotors_fraction_superseded.holds | False | True |
| sensitivity.trackers[1].findings.persistent_rotors_fraction_superseded.label | does not hold (provisional) | holds (provisional) |
| sensitivity.trackers[1].findings.persistent_rotors_fraction_superseded.present | {'illuminated_arrhythmia': 0.08181818181818182} | [absent] |
| sensitivity.trackers[1].findings.persistent_rotors_fraction_superseded.ratio | [absent] | None |
| sensitivity.trackers[1].is_run_setting | True | [absent] |
| sensitivity.trackers[1].persistent_rotor_tracks | 3 | 1 |
| sensitivity.trackers[1].segments.after_step | [absent] | {'persistent_rotors': 0, 'singularity_count_max': 4, 'singularity_count_mean': 0.09469026548672567, 'singularity_frames_frac': 0.05663716814159292, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} |
| sensitivity.trackers[1].segments.before_step | [absent] | {'persistent_rotors': 1, 'singularity_count_max': 4, 'singularity_count_mean': 0.5656716417910448, 'singularity_frames_frac': 0.3970149253731343, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 3126, 'start': 3049, 'charge': -1, 'lifetime_cycles': 1.5, 'lifetime_frames': 78, 'frames_in_segment': 78}], 'persistent_rotor_frames_frac': 0.11641791044776119} |
| sensitivity.trackers[1].segments.illuminated_after_termination | {'persistent_rotors': 0, 'singularity_count_max': 9, 'singularity_count_mean': 0.11566131710016603, 'singularity_frames_frac': 0.0448256779192031, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.trackers[1].segments.illuminated_arrhythmia | {'persistent_rotors': 3, 'singularity_count_max': 5, 'singularity_count_mean': 0.7380471380471381, 'singularity_frames_frac': 0.49966329966329964, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 408, 'start': 334, 'charge': -1, 'lifetime_cycles': 1.15, 'lifetime_frames': 75, 'frames_in_segment': 75}, {'end': 735, 'start': 671, 'charge': -1, 'lifetime_cycles': 1.0, 'lifetime_frames': 65, 'frames_in_segment': 65}, {'end': 1212, 'start': 1110, 'charge': -1, 'lifetime_cycles': 1.58, 'lifetime_frames': 103, 'frames_in_segment': 103}], 'persistent_rotor_frames_frac': 0.08181818181818182} | [absent] |
| sensitivity.trackers[1].segments.light_off | {'persistent_rotors': 0, 'singularity_count_max': 13, 'singularity_count_mean': 0.12176039119804401, 'singularity_frames_frac': 0.05599022004889975, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.trackers[2].findings.persistent_rotors.absent | {'light_off': 0, 'illuminated_after_termination': 0} | [absent] |
| sensitivity.trackers[2].findings.persistent_rotors.after | [absent] | 0 |
| sensitivity.trackers[2].findings.persistent_rotors.before | [absent] | 1 |
| sensitivity.trackers[2].findings.persistent_rotors.lifetimes_frames.after_step | [absent] | [] |
| sensitivity.trackers[2].findings.persistent_rotors.lifetimes_frames.before_step | [absent] | [136] |
| sensitivity.trackers[2].findings.persistent_rotors.lifetimes_frames.illuminated_after_termination | [] | [absent] |
| sensitivity.trackers[2].findings.persistent_rotors.lifetimes_frames.illuminated_arrhythmia | [75, 65, 103] | [absent] |
| sensitivity.trackers[2].findings.persistent_rotors.lifetimes_frames.light_off | [] | [absent] |
| sensitivity.trackers[2].findings.persistent_rotors.present | {'illuminated_arrhythmia': 3} | [absent] |
| sensitivity.trackers[2].findings.persistent_rotors_fraction_superseded.absent | {'light_off': 0.0, 'illuminated_after_termination': 0.0} | [absent] |
| sensitivity.trackers[2].findings.persistent_rotors_fraction_superseded.after | [absent] | 0.0 |
| sensitivity.trackers[2].findings.persistent_rotors_fraction_superseded.before | [absent] | 0.20298507462686566 |
| sensitivity.trackers[2].findings.persistent_rotors_fraction_superseded.holds | False | True |
| sensitivity.trackers[2].findings.persistent_rotors_fraction_superseded.label | does not hold (provisional) | holds (provisional) |
| sensitivity.trackers[2].findings.persistent_rotors_fraction_superseded.present | {'illuminated_arrhythmia': 0.08181818181818182} | [absent] |
| sensitivity.trackers[2].findings.persistent_rotors_fraction_superseded.ratio | [absent] | None |
| sensitivity.trackers[2].is_run_setting | False | [absent] |
| sensitivity.trackers[2].persistent_rotor_tracks | 3 | 1 |
| sensitivity.trackers[2].segments.after_step | [absent] | {'persistent_rotors': 0, 'singularity_count_max': 4, 'singularity_count_mean': 0.09469026548672567, 'singularity_frames_frac': 0.05663716814159292, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} |
| sensitivity.trackers[2].segments.before_step | [absent] | {'persistent_rotors': 1, 'singularity_count_max': 4, 'singularity_count_mean': 0.5656716417910448, 'singularity_frames_frac': 0.3970149253731343, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 3126, 'start': 2991, 'charge': -1, 'lifetime_cycles': 2.62, 'lifetime_frames': 136, 'frames_in_segment': 136}], 'persistent_rotor_frames_frac': 0.20298507462686566} |
| sensitivity.trackers[2].segments.illuminated_after_termination | {'persistent_rotors': 0, 'singularity_count_max': 9, 'singularity_count_mean': 0.11566131710016603, 'singularity_frames_frac': 0.0448256779192031, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.trackers[2].segments.illuminated_arrhythmia | {'persistent_rotors': 3, 'singularity_count_max': 5, 'singularity_count_mean': 0.7380471380471381, 'singularity_frames_frac': 0.49966329966329964, 'persistent_rotor_count_max': 1, 'persistent_rotor_durations': [{'end': 408, 'start': 334, 'charge': -1, 'lifetime_cycles': 1.15, 'lifetime_frames': 75, 'frames_in_segment': 75}, {'end': 735, 'start': 671, 'charge': -1, 'lifetime_cycles': 1.0, 'lifetime_frames': 65, 'frames_in_segment': 65}, {'end': 1212, 'start': 1110, 'charge': -1, 'lifetime_cycles': 1.58, 'lifetime_frames': 103, 'frames_in_segment': 103}], 'persistent_rotor_frames_frac': 0.08181818181818182} | [absent] |
| sensitivity.trackers[2].segments.light_off | {'persistent_rotors': 0, 'singularity_count_max': 13, 'singularity_count_mean': 0.12176039119804401, 'singularity_frames_frac': 0.05599022004889975, 'persistent_rotor_count_max': 0, 'persistent_rotor_durations': [], 'persistent_rotor_frames_frac': 0.0} | [absent] |
| sensitivity.varied.spatial_sigma.run | 0.0 | [absent] |
| criteria_status.rules | length 15 | length 13 |
| criteria_status.rules[0].values.baseline_frames | 241 | 121 |
| criteria_status.rules[0].values.spatial_sigma | 0.0 | 1.0 |
| criteria_status.rules[4].values.min_frames | 65 | 52 |
| criteria_status.rules[6].values.sigmas.run | 0.0 | [absent] |
| criteria_status.rules[7].description | Frames analysed: whole recording minus one filter pad at each end (unless the plan narrows it) | Frame window analysed per seed recording |
| criteria_status.rules[7].location | worker/voltage/runs.py (default_window) | worker/voltage/runs.py (SEED_RUNS) |
| criteria_status.rules[7].values.f0 | 200 | 2500 |
| criteria_status.rules[7].values.f1 | 9067 | 4300 |
| criteria_status.rules[9].values.direction | [absent] | up |
| criteria_status.rules[9].values.edges_excluded | [absent] | one window at each end |
| criteria_status.rules[9].values.event_id | [absent] | 46c59a51-1a01-4aed-8021-db9a63720a1d |
| criteria_status.rules[9].values.frame | [absent] | 3170 |
| criteria_status.rules[9].values.min_step_rel_beat | [absent] | 0.5 |
| criteria_status.rules[9].values.min_z | [absent] | 5.0 |
| criteria_status.rules[9].values.windows | [absent] | [101, 151, 201] |
| criteria_status.rules[10].values.events | ['illumination_on@0', 'illumination_off@4977'] | [absent] |
| criteria_status.rules[10].values.files | [absent] | ['0111210010.txt'] |
| criteria_status.rules[11].description | Mouse segments bounded by DAQ light events and the baseline step, interpreted as spiral termination under illumination (project lead, from Hussaini et al. 2023) | Singularity before/after finding holds if frac(before) >= min_frac and >= min_ratio x frac(after) at every setting (also kept, superseded, for persistent rotors) |
| criteria_status.rules[11].expert | cardiac electrophysiologist (ideally the depositing authors) | cardiac electrophysiologist + biostatistician |
| criteria_status.rules[11].location | worker/voltage/annotations.py (MOUSE_SEGMENTS) | worker/voltage/sensitivity.py (MIN_FRAC, MIN_RATIO) |
| criteria_status.rules[11].values.illuminated_after_termination | [3170, 4977] | [absent] |
| criteria_status.rules[11].values.illuminated_arrhythmia | [0, 3170] | [absent] |
| criteria_status.rules[11].values.light_off | [4977, 9267] | [absent] |
| criteria_status.rules[11].values.min_frac | [absent] | 0.1 |
| criteria_status.rules[11].values.min_ratio | [absent] | 2.0 |
| criteria_status.rules[12].description | Singularity before/after finding holds if frac(before) >= min_frac and >= min_ratio x frac(after) at every setting (also kept, superseded, for persistent rotors) | Persistent-rotor finding holds if >= 1 persistent rotor overlaps the segment before the event and none overlaps the segment after, at every setting |
| criteria_status.rules[12].expert | cardiac electrophysiologist + biostatistician | cardiac electrophysiologist |
| criteria_status.rules[12].location | worker/voltage/sensitivity.py (MIN_FRAC, MIN_RATIO) | worker/voltage/sensitivity.py (MIN_ROTORS_BEFORE, MAX_ROTORS_AFTER) |
| criteria_status.rules[12].values.max_rotors_after | [absent] | 0 |
| criteria_status.rules[12].values.min_frac | 0.1 | [absent] |
| criteria_status.rules[12].values.min_lifetime_frames | [absent] | 52 |
| criteria_status.rules[12].values.min_ratio | 2.0 | [absent] |
| criteria_status.rules[12].values.min_rotors_before | [absent] | 1 |
| criteria_status.rules[12].values.spanning_rotor | [absent] | counts in every segment it overlaps |
| reportable | {'persistent_rotor_tracks': {'unit': 'count', 'status': 'unstable, not reportable', 'settings': 'sensitivity grid + trackers', 'range_across_settings': [0.0, 5.0]}, 'light_off.dominant_freq_hz': {'unit': 'Hz', 'status': 'unstable, not reportable', 'settings': 'sensitivity grid + trackers', 'range_across_settings': [4.89, 16.87]}, 'light_off.persistent_rotors': {'unit': 'count', 'value': 0, 'checked': 'no_cited_range'}, 'light_off.singularity_frames_frac': {'unit': 'fraction of frames', 'status': 'unstable, not reportable', 'settings': 'sensitivity grid + trackers', 'range_across_settings': [0.04792176039119805, 0.06821515892420538]}, 'light_off.persistent_rotor_count_max': {'unit': 'count', 'value': 0, 'checked': 'no_cited_range'}, 'illuminated_arrhythmia.dominant_freq_hz': {'unit': 'Hz', 'value': 15.488, 'checked': 'within_range'}, 'illuminated_arrhythmia.persistent_rotors': {'unit': 'count', 'status': 'unstable, not reportable', 'settings': 'sensitivity grid + trackers', 'range_across_settings': [0.0, 5.0]}, 'illuminated_after_termination.dominant_freq_hz': {'unit': 'Hz', 'status': 'unstable, not reportable', 'settings': 'sensitivity grid + trackers', 'range_across_settings': [4.981, 12.175]}, 'illuminated_arrhythmia.singularity_frames_frac': {'unit': 'fraction of frames', 'value': 0.49966329966329964, 'checked': 'no_cited_range'}, 'illuminated_after_termination.persistent_rotors': {'unit': 'count', 'value': 0, 'checked': 'no_cited_range'}, 'illuminated_arrhythmia.persistent_rotor_count_max': {'unit': 'count', 'status': 'unstable, not reportable', 'settings': 'sensitivity grid + trackers', 'range_across_settings': [0.0, 1.0]}, 'illuminated_after_termination.singularity_frames_frac': {'unit': 'fraction of frames', 'status': 'unstable, not reportable', 'settings': 'sensitivity grid + trackers', 'range_across_settings': [0.03984504703929164, 0.053126729385722195]}, 'illuminated_after_termination.persistent_rotor_count_max': {'unit': 'count', 'value': 0, 'checked': 'no_cited_range'}} | None |
| physiology_ok | True | None |
| critic.checks | {'checks': {'persistent_rotor_tracks': {'unit': 'count', 'range': None, 'metric': 'persistent_rotor_tracks', 'stable': False, 'status': 'unstable_not_reportable', 'segment': None, 'spread_frac': 1.667, 'value_at_run_setting': 3, 'range_across_settings': [0.0, 5.0]}, 'light_off.dominant_freq_hz': {'unit': 'Hz', 'range': None, 'metric': 'dominant_freq_hz', 'stable': False, 'status': 'unstable_not_reportable', 'segment': 'light_off', 'spread_frac': 1.633, 'value_at_run_setting': 4.89, 'range_across_settings': [4.89, 16.87]}, 'light_off.persistent_rotors': {'unit': 'count', 'range': None, 'metric': 'persistent_rotors', 'stable': True, 'status': 'no_cited_range', 'segment': 'light_off', 'spread_frac': 0.0, 'value_at_run_setting': 0, 'range_across_settings': [0.0, 0.0]}, 'light_off.singularity_frames_frac': {'unit': 'fraction of frames', 'range': None, 'metric': 'singularity_frames_frac', 'stable': False, 'status': 'unstable_not_reportable', 'segment': 'light_off', 'spread_frac': 0.336, 'value_at_run_setting': 0.05599022004889975, 'range_across_settings': [0.04792176039119805, 0.06821515892420538]}, 'light_off.persistent_rotor_count_max': {'unit': 'count', 'range': None, 'metric': 'persistent_rotor_count_max', 'stable': True, 'status': 'no_cited_range', 'segment': 'light_off', 'spread_frac': 0.0, 'value_at_run_setting': 0, 'range_across_settings': [0.0, 0.0]}, 'illuminated_arrhythmia.dominant_freq_hz': {'unit': 'Hz', 'range': {'ref': '10.1371/journal.pcbi.1011660', 'cited_low': 18.75, 'cited_high': 20.0, 'checked_low': 14.0625, 'checked_high': 25.0}, 'metric': 'dominant_freq_hz', 'stable': True, 'status': 'within_range', 'segment': 'illuminated_arrhythmia', 'spread_frac': 0.0, 'value_at_run_setting': 15.488, 'range_across_settings': [15.488, 15.488]}, 'illuminated_arrhythmia.persistent_rotors': {'unit': 'count', 'range': None, 'metric': 'persistent_rotors', 'stable': False, 'status': 'unstable_not_reportable', 'segment': 'illuminated_arrhythmia', 'spread_frac': 1.667, 'value_at_run_setting': 3, 'range_across_settings': [0.0, 5.0]}, 'illuminated_after_termination.dominant_freq_hz': {'unit': 'Hz', 'range': None, 'metric': 'dominant_freq_hz', 'stable': False, 'status': 'unstable_not_reportable', 'segment': 'illuminated_after_termination', 'spread_frac': 0.722, 'value_at_run_setting': 4.981, 'range_across_settings': [4.981, 12.175]}, 'illuminated_arrhythmia.singularity_frames_frac': {'unit': 'fraction of frames', 'range': None, 'metric': 'singularity_frames_frac', 'stable': True, 'status': 'no_cited_range', 'segment': 'illuminated_arrhythmia', 'spread_frac': 0.051, 'value_at_run_setting': 0.49966329966329964, 'range_across_settings': [0.4744107744107744, 0.49966329966329964]}, 'illuminated_after_termination.persistent_rotors': {'unit': 'count', 'range': None, 'metric': 'persistent_rotors', 'stable': True, 'status': 'no_cited_range', 'segment': 'illuminated_after_termination', 'spread_frac': 0.0, 'value_at_run_setting': 0, 'range_across_settings': [0.0, 0.0]}, 'illuminated_arrhythmia.persistent_rotor_count_max': {'unit': 'count', 'range': None, 'metric': 'persistent_rotor_count_max', 'stable': False, 'status': 'unstable_not_reportable', 'segment': 'illuminated_arrhythmia', 'spread_frac': 1.0, 'value_at_run_setting': 1, 'range_across_settings': [0.0, 1.0]}, 'illuminated_after_termination.singularity_frames_frac': {'unit': 'fraction of frames', 'range': None, 'metric': 'singularity_frames_frac', 'stable': False, 'status': 'unstable_not_reportable', 'segment': 'illuminated_after_termination', 'spread_frac': 0.281, 'value_at_run_setting': 0.0448256779192031, 'range_across_settings': [0.03984504703929164, 0.053126729385722195]}, 'illuminated_after_termination.persistent_rotor_count_max': {'unit': 'count', 'range': None, 'metric': 'persistent_rotor_count_max', 'stable': True, 'status': 'no_cited_range', 'segment': 'illuminated_after_termination', 'spread_frac': 0.0, 'value_at_run_setting': 0, 'range_across_settings': [0.0, 0.0]}}, 'unstable': ['light_off.singularity_frames_frac', 'light_off.dominant_freq_hz', 'illuminated_arrhythmia.persistent_rotors', 'illuminated_arrhythmia.persistent_rotor_count_max', 'illuminated_after_termination.singularity_frames_frac', 'illuminated_after_termination.dominant_freq_hz', 'persistent_rotor_tracks'], 'physiology_ok': True, 'ranged_checks': ['illuminated_arrhythmia.dominant_freq_hz']} | None |
| critic.stability | {'persistent_rotor_tracks': {'max': 5.0, 'min': 0.0, 'median': 3.0, 'stable': False, 'settings': 15, 'spread_frac': 1.667, 'values_grid': [2, 2, 2, 3, 3, 2, 2, 3, 4, 4, 5, 4], 'varied_over': 'filter grid + trackers', 'values_trackers': [0, 3, 3]}, 'light_off.dominant_freq_hz': {'max': 16.87, 'min': 4.89, 'median': 7.335, 'stable': False, 'settings': 3, 'spread_frac': 1.633, 'varied_over': 'baseline windows', 'values_by_baseline': {'81': 16.87, '121': 7.335, '241': 4.89}}, 'light_off.persistent_rotors': {'max': 0.0, 'min': 0.0, 'median': 0.0, 'stable': True, 'settings': 15, 'spread_frac': 0.0, 'values_grid': [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], 'varied_over': 'filter grid + trackers', 'values_trackers': [0, 0, 0]}, 'light_off.singularity_frames_frac': {'max': 0.06821515892420538, 'min': 0.04792176039119805, 'median': 0.060391198044009775, 'stable': False, 'settings': 12, 'spread_frac': 0.336, 'values_grid': [0.05476772616136919, 0.05281173594132029, 0.04792176039119805, 0.05599022004889975, 0.06821515892420538, 0.06625916870415648, 0.05965770171149144, 0.06821515892420538, 0.06405867970660147, 0.061124694376528114, 0.05281173594132029, 0.06625916870415648], 'varied_over': 'filter grid'}, 'light_off.persistent_rotor_present': {'stable': True, 'values_grid': [False, False, False, False, False, False, False, False, False, False, False, False], 'varied_over': 'filter grid + trackers', 'values_trackers': [False, False, False], 'stable_across_filters': True, 'stable_across_trackers': True}, 'light_off.persistent_rotor_count_max': {'max': 0.0, 'min': 0.0, 'median': 0.0, 'stable': True, 'settings': 15, 'spread_frac': 0.0, 'values_grid': [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], 'varied_over': 'filter grid + trackers', 'values_trackers': [0, 0, 0]}, 'illuminated_arrhythmia.dominant_freq_hz': {'max': 15.488, 'min': 15.488, 'median': 15.488, 'stable': True, 'settings': 3, 'spread_frac': 0.0, 'varied_over': 'baseline windows', 'values_by_baseline': {'81': 15.488, '121': 15.488, '241': 15.488}}, 'illuminated_arrhythmia.persistent_rotors': {'max': 5.0, 'min': 0.0, 'median': 3.0, 'stable': False, 'settings': 15, 'spread_frac': 1.667, 'values_grid': [2, 2, 2, 3, 3, 2, 2, 3, 4, 4, 5, 4], 'varied_over': 'filter grid + trackers', 'values_trackers': [0, 3, 3]}, 'illuminated_after_termination.dominant_freq_hz': {'max': 12.175, 'min': 4.981, 'median': 9.961, 'stable': False, 'settings': 3, 'spread_frac': 0.722, 'varied_over': 'baseline windows', 'values_by_baseline': {'81': 12.175, '121': 9.961, '241': 4.981}}, 'illuminated_arrhythmia.singularity_frames_frac': {'max': 0.49966329966329964, 'min': 0.4744107744107744, 'median': 0.49292929292929294, 'stable': True, 'settings': 12, 'spread_frac': 0.051, 'values_grid': [0.498989898989899, 0.49696969696969695, 0.47878787878787876, 0.49966329966329964, 0.49326599326599324, 0.4888888888888889, 0.4744107744107744, 0.49292929292929294, 0.49292929292929294, 0.49023569023569025, 0.47744107744107744, 0.49393939393939396], 'varied_over': 'filter grid'}, 'illuminated_after_termination.persistent_rotors': {'max': 0.0, 'min': 0.0, 'median': 0.0, 'stable': True, 'settings': 15, 'spread_frac': 0.0, 'values_grid': [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], 'varied_over': 'filter grid + trackers', 'values_trackers': [0, 0, 0]}, 'illuminated_arrhythmia.persistent_rotor_present': {'stable': False, 'values_grid': [True, True, True, True, True, True, True, True, True, True, True, True], 'varied_over': 'filter grid + trackers', 'values_trackers': [False, True, True], 'stable_across_filters': True, 'stable_across_trackers': False}, 'illuminated_arrhythmia.persistent_rotor_count_max': {'max': 1.0, 'min': 0.0, 'median': 1.0, 'stable': False, 'settings': 15, 'spread_frac': 1.0, 'values_grid': [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1], 'varied_over': 'filter grid + trackers', 'values_trackers': [0, 1, 1]}, 'illuminated_after_termination.singularity_frames_frac': {'max': 0.053126729385722195, 'min': 0.03984504703929164, 'median': 0.04731599335915883, 'stable': False, 'settings': 12, 'spread_frac': 0.281, 'values_grid': [0.04427227448810182, 0.04316546762589928, 0.03984504703929164, 0.0448256779192031, 0.05201992252351965, 0.04980630879911455, 0.04427227448810182, 0.053126729385722195, 0.050359712230215826, 0.04980630879911455, 0.04261206419479801, 0.05257332595462092], 'varied_over': 'filter grid'}, 'illuminated_after_termination.persistent_rotor_present': {'stable': True, 'values_grid': [False, False, False, False, False, False, False, False, False, False, False, False], 'varied_over': 'filter grid + trackers', 'values_trackers': [False, False, False], 'stable_across_filters': True, 'stable_across_trackers': True}, 'illuminated_after_termination.persistent_rotor_count_max': {'max': 0.0, 'min': 0.0, 'median': 0.0, 'stable': True, 'settings': 15, 'spread_frac': 0.0, 'values_grid': [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], 'varied_over': 'filter grid + trackers', 'values_trackers': [0, 0, 0]}} | None |
| critic.persistence_variants | {'agree': False, 'measured_cycle': {'basis': 'one dominant cycle of the fastest segment at the run setting', 'applicable': True, 'min_frames': 65, 'holds_across_filters': True, 'label_across_filters': 'holds (provisional)', 'holds_across_trackers': False, 'label_across_trackers': 'does not hold (provisional)', 'present_segment_counts_grid': {'illuminated_arrhythmia': [2, 2, 2, 3, 3, 2, 2, 3, 4, 4, 5, 4]}, 'present_segment_lifetimes_run': {'illuminated_arrhythmia': [75, 65, 103]}}, 'paper_rotation': {'ref': '10.1371/journal.pcbi.1011660', 'basis': '1000 frames/s / 20 Hz, cited', 'passage': ' is shown in Fig 3B. It shows that the arrhythmia consists of a single spiral wave with a stationary core dynamic and a rotational frequency of ≈ 20 Hz before illumination. During a single global optical pulse with a PL of 5000 ms and an LI of 3.21 μW/mm2, the frequency of the arrhythmia de', 'applicable': True, 'min_frames': 50, 'rotation_hz': 20.0, 'holds_across_filters': True, 'label_across_filters': 'holds (provisional)', 'holds_across_trackers': True, 'label_across_trackers': 'holds (provisional)', 'present_segment_counts_grid': {'illuminated_arrhythmia': [8, 8, 7, 8, 7, 7, 7, 7, 7, 7, 7, 7]}, 'present_segment_lifetimes_run': {'illuminated_arrhythmia': [75, 65, 57, 103, 57, 62, 58, 54]}}} | None |
| critic.trackers | {'note': 'disagreement is reported as a review item, not folded into the pass/fail', 'agree': False, 'trackers': [{'link_px': 2.0, 'max_gap': 1, 'tracker': 'strict', 'is_run_setting': False, 'persistent_rotor_rule': 'does not hold (provisional)', 'persistent_rotors_by_segment': {'light_off': 0, 'illuminated_arrhythmia': 0, 'illuminated_after_termination': 0}}, {'link_px': 4.0, 'max_gap': 5, 'tracker': 'default', 'is_run_setting': True, 'persistent_rotor_rule': 'holds (provisional)', 'persistent_rotors_by_segment': {'light_off': 0, 'illuminated_arrhythmia': 3, 'illuminated_after_termination': 0}}, {'link_px': 6.0, 'max_gap': 10, 'tracker': 'loose', 'is_run_setting': False, 'persistent_rotor_rule': 'holds (provisional)', 'persistent_rotors_by_segment': {'light_off': 0, 'illuminated_arrhythmia': 3, 'illuminated_after_termination': 0}}]} | None |
| critic.required_review_topics | ['unstable:light_off.singularity_frames_frac', 'unstable:light_off.dominant_freq_hz', 'unstable:illuminated_arrhythmia.persistent_rotors', 'unstable:illuminated_arrhythmia.persistent_rotor_count_max', 'unstable:illuminated_after_termination.singularity_frames_frac', 'unstable:illuminated_after_termination.dominant_freq_hz', 'unstable:persistent_rotor_tracks', 'tracker_disagreement', 'persistence_threshold_disagreement'] | None |
| critic.ranges | [{'low': 18.75, 'high': 20.0, 'unit': 'Hz', 'scope': 'one optical mapping recording in the same study (spiral wave before and during illumination); not a population range', 'metric': 'dominant_freq_hz', 'source': {'ref': '10.1371/journal.pcbi.1011660', 'quotes': ['rotational frequency of ≈ 20 Hz before illumination', 'the frequency of the arrhythmia decreases to ≈ 18\\.75 Hz'], 'passages': [' is shown in Fig 3B. It shows that the arrhythmia consists of a single spiral wave with a stationary core dynamic and a rotational frequency of ≈ 20 Hz before illumination. During a single global optical pulse with a PL of 5000 ms and an LI of 3.21 μW/mm2, the frequency of the arrhythmia de', 'ncy of ≈ 20 Hz before illumination. During a single global optical pulse with a PL of 5000 ms and an LI of 3.21 μW/mm2, the frequency of the arrhythmia decreases to ≈ 18.75 Hz. It is important to note that the frequency reverses its original value of ≈ 20 Hz when the light is turned off. Fig 3C']}, 'status': 'provisional', 'tissue': 'whole_heart', 'species': 'mouse', 'applies_to': {'segment_expected_persistent_rotors': 'present'}, 'checked_low': 14.0625, 'checked_high': 25.0, 'tolerance_frac': 0.25}] | None |
| critic.passages | {'mouse_spiral_rotation_period': {'ref': '10.1371/journal.pcbi.1011660', 'note': 'At 1000 frames/s, 20 Hz is a 50-frame rotation; the illuminated value of 18.75 Hz would be 53 frames.', 'quotes': ['rotational frequency of ≈ 20 Hz before illumination'], 'status': 'provisional', 'passages': [' is shown in Fig 3B. It shows that the arrhythmia consists of a single spiral wave with a stationary core dynamic and a rotational frequency of ≈ 20 Hz before illumination. During a single global optical pulse with a PL of 5000 ms and an LI of 3.21 μW/mm2, the frequency of the arrhythmia de'], 'applies_to': {'species': 'mouse'}, 'rotation_hz': 20.0}} | None |
| critic.verdict.physiology_ok | True | None |
| critic.verdict.send_back | False | None |
| critic.verdict.metric_statuses | length 13 | length 0 |
| pipeline.params.baseline_frames | 241 | 121 |
| pipeline.params.render.step | 4 | 2 |
| pipeline.params.spatial_sigma | 0.0 | 1.0 |
| pipeline.params.tracking.min_frames | 65 | 52 |
| pipeline.params.window.f0 | 200 | 2500 |
| pipeline.params.window.f1 | 9067 | 4300 |
| pipeline.params.window.frame_rate_hz | 1000 | [absent] |
| pipeline.params.window.frame_rate_source | {'ref': '10.1371/journal.pcbi.1011660', 'kind': 'publication', 'note': 'Camera frames are 64 x 64 in the paper; the deposit is 64 x 55 (cropped). Consistent with the DAQ: 10 samples per frame and a 5 s light pulse spanning 50,001 samples imply a 10 kHz DAQ.', 'quote': ' 775 ± 70nm bandpass filter (FF01–775/140-25, Semrock) and finally by the camera (EMCCD, Cascade 128+, Photometrics) with a spatial resolution of 64 × 64 pixels (133 μm per pixel) at 1 kHz. Optical Mapping recordings were acquired with software MultiRecorder and analysed with software PythonAnalyser (both developed by Research Group Biomedical Physics). Electrical s', 'section': 'Materials and methods: Optical mapping experiments on ventricular arrhythmia and its termination in the intact mouse heart'} | [absent] |
| pipeline.params.window.illumination | Acquisition log (LED trigger channel, provisional interpretation): illumination on over frames 200-4977 of the analysed frames 200-9067. | Acquisition log (0111210010.txt, LED trigger channel, provisional interpretation): illumination on throughout the analysed frames 2500-4300. |
| pipeline.params.window.segment_cycles_frames.after_step | [absent] | 141 |
| pipeline.params.window.segment_cycles_frames.before_step | [absent] | 52 |
| pipeline.params.window.segment_cycles_frames.illuminated_after_termination | 201 | [absent] |
| pipeline.params.window.segment_cycles_frames.illuminated_arrhythmia | 65 | [absent] |
| pipeline.params.window.segment_cycles_frames.light_off | 204 | [absent] |
| pipeline.params.window.segments | [{'name': 'illuminated_arrhythmia', 'label': 'illumination with arrhythmia', 'defined': [0, 3170], 'analysed': [200, 3170], 'citation': {'ref': '10.1371/journal.pcbi.1011660', 'quote': 't stimulus with LI = 3.44 μW/mm2 and PL = 5 s. Fig 2C shows a monophasic action potential (MAP) signal (in black) before, during, and after illumination. It shows the sinus rhythm returns after 3190 ms of illumination. Fig 2D presents a closer look at the MAP signal of the heart during the last few rotations of arrhythmia and the first few action potentials of sinus rhythm. Fig 2E illustrates a'}, 'defined_by': "project lead (not a domain scientist), following the paper's design", 'segment_id': '9ba31b07-6c35-4baf-9eb7-c5433889f987', 'end_event_id': '46c59a51-1a01-4aed-8021-db9a63720a1d', 'start_event_id': None, 'expected_persistent_rotors': 'present'}, {'name': 'illuminated_after_termination', 'label': 'illumination after termination', 'defined': [3170, 4977], 'analysed': [3170, 4977], 'citation': {'ref': '10.1371/journal.pcbi.1011660', 'quote': 't stimulus with LI = 3.44 μW/mm2 and PL = 5 s. Fig 2C shows a monophasic action potential (MAP) signal (in black) before, during, and after illumination. It shows the sinus rhythm returns after 3190 ms of illumination. Fig 2D presents a closer look at the MAP signal of the heart during the last few rotations of arrhythmia and the first few action potentials of sinus rhythm. Fig 2E illustrates a'}, 'defined_by': "project lead (not a domain scientist), following the paper's design", 'segment_id': 'a747e5e7-a3a6-44b4-b66e-5737c8ba7345', 'end_event_id': 'db2ad5f3-9b96-4ec1-9ccd-9c82c3425609', 'start_event_id': '46c59a51-1a01-4aed-8021-db9a63720a1d', 'expected_persistent_rotors': 'absent'}, {'name': 'light_off', 'label': 'light off', 'defined': [4977, 9267], 'analysed': [4977, 9067], 'citation': {'ref': '10.1371/journal.pcbi.1011660', 'quote': 't stimulus with LI = 3.44 μW/mm2 and PL = 5 s. Fig 2C shows a monophasic action potential (MAP) signal (in black) before, during, and after illumination. It shows the sinus rhythm returns after 3190 ms of illumination. Fig 2D presents a closer look at the MAP signal of the heart during the last few rotations of arrhythmia and the first few action potentials of sinus rhythm. Fig 2E illustrates a'}, 'defined_by': "project lead (not a domain scientist), following the paper's design", 'segment_id': 'd65c796e-74f0-4f90-ae86-7b528a9652a6', 'end_event_id': None, 'start_event_id': 'db2ad5f3-9b96-4ec1-9ccd-9c82c3425609', 'expected_persistent_rotors': 'absent'}] | {'after_step': [3170, 4300], 'before_step': [2500, 3170]} |
| pipeline.params.window.split_event | [absent] | {'kind': 'baseline_step', 'cause': 'not established', 'frame': 3170, 'source': 'image', 'event_id': '46c59a51-1a01-4aed-8021-db9a63720a1d', 'uncertainty_frames': 17} |
| pipeline.steps | length 9 | length 11 |
| pipeline.steps[2] | baseline_correct | detect_events |
| pipeline.steps[3] | polarity | baseline_correct |
| pipeline.steps[4] | hilbert_phase | polarity |
| pipeline.steps[5] | phase_singularities | spatial_filter(phase only) |
| pipeline.steps[6] | track_and_pair | hilbert_phase |
| pipeline.steps[7] | sensitivity | phase_singularities |
| pipeline.steps[8] | render | track_and_pair |
| methods_text | The recording will be loaded and checked as processed deposit data, then analysed over the whole available window after filter padding, with analysed frames 200–9067 from a 9267-frame, 64 × 55 recording at 1000 Hz from the publication-based frame-rate source. The provisional segments, defaults, bounds, thresholds and criteria are not yet reviewed by a domain scientist; the provisional segments are illuminated_arrhythmia frames 0–3170, illuminated_after_termination frames 3170–4977, and light_off frames 4977–9267. Baseline correction will use a centered moving-average window of 241 frames, polarity will be handled as inverted, no phase-only spatial Gaussian filter will be applied because spatial_sigma is 0, Hilbert phase will be computed, phase singularities will be counted at |winding| threshold 0.9 turns while excluding plaquettes within rotor_erode_px 3 of the tissue edge, singularities will be tracked and paired with link_px 4, max_gap 5, pair_dist_px 3, and paired_frac 0.5, the fixed sensitivity grid plus these chosen values will be run, and rendering will show every 4th frame. | Recording Mouse heart, spiral wave and optogenetic termination (M13Rec001) (doi:10.5281/zenodo.10228296; 64x55 px, 9267 frames, frame rate not stated) was analysed over frames 2500-4300. Deposit shows signs of prior processing (provisional): negative values, non integer, nan mask all frames, temporal smoothing, spatial smoothing. Each pixel was baseline-corrected by subtracting a 121-frame centered moving average; NaN pixels were set to zero. Dye polarity (inverted) was taken from the sign of the median per-pixel skew of dV/dt. For phase only, each frame was spatially filtered with a Gaussian (sigma 1.0 px, truncated at 4.0 sigma); no temporal low-pass was applied. Phase was the angle of the Hilbert transform, computed with 200 frames of padding on each side. Phase singularities were plaquettes with |winding| > 0.9 turns at least 3 px inside the tissue edge; they were tracked across frames (same charge, <= 4.0 px per frame, gaps <= 5 frames), and a persistent rotor was a track lasting >= 52 frames (one cycle of the fastest segment) that was within 3.0 px of an opposite-charge singularity in no more than 50% of its frames. Acquisition log (0111210010.txt, LED trigger channel, provisional interpretation): illumination on throughout the analysed frames 2500-4300. Segments were split at a baseline step detected at frame 3170 (+/- 17, source: image, provisional; cause not established): before_step 2500-3170, after_step 3170-4300. Sensitivity: baseline 241, 121, 81 frames x sigma 0.5, 1.0, 2.0 px, and tracker variants. Finding 'singularities in 'before_step' but not (or less in) 'after_step'': across filters holds (provisional). Finding 'persistent rotors in 'before_step' but not (or less in) 'after_step'': across filters holds (provisional); across trackers does not hold (provisional). Finding 'persistent rotors in 'before_step' but not (or less in) 'after_step'': across filters does not hold (provisional); across trackers does not hold (provisional). All thresholds and criteria are provisional pending review by a domain scientist. |