masked_data_RG_80nM run f6b6ff59

masked_data_RG_80nM, run f6b6ff59

Status done, stage done; requested by project lead; worker [not recorded]; started 2026-10-27 20:06 UTC, finished 2026-10-27 20:08 UTC, 105 s; signature 3fa5df4f

Stages

Stage	Started	Seconds
[no stage log; run predates stage timing]

Log

Time	Agent	Action	Detail
20:06:27	runs	run started	{"recording_id": "73e4ebe2-6b09-4582-a1d6-ded901b7d124", "run_id": "f6b6ff59-0fed-4101-8efc-60ca6b3270cd"}
20:08:12	runs	signature written	{"criteria": "provisional", "holds": null, "run_id": "f6b6ff59-0fed-4101-8efc-60ca6b3270cd", "signature_id": "3fa5df4f-431e-4982-b97f-e38279ec4dd6"}

Entries from the audit log for this run; new rows and stage changes arrive by realtime while the run is open (connecting).

Pipeline check

[no pipeline check stored for this run]

Inspector

This is a preprocessed ex vivo Langendorff rat whole-heart VF optical-mapping recording under 80 nM rotigaptide, recorded at 1000 Hz according to the deposit; that agrees with the value already on record. The 128 × 80 deposited image size matches both the deposit and the linked paper, and the paper also reports 1000 frames/s. The data have documented preprocessing before deposit, including background subtraction, 3 × 3 spatial binning, 100 Hz low-pass filtering, drift removal, and normalization, so analyses should not treat them as raw camera counts. Measured polarity is consistently non-inverted even though RH237 normally dims on depolarization, so use measured polarity for orientation. No acquisition-log or detected event annotations are available for this recording.

Measurement	Value	Method, Caveat
SNR, median (p10–p90)	18.8 (13.9–25.9)	assumes white noise; on temporally smoothed deposits noise is underestimated and SNR inflated
Mask coverage	50.9%, 5216 of 10240 px	depositor NaN mask (frame 0)
Polarity	blocks 7, inverted False, blocks agreeing 7, median dvdt skew 0.08132843673229218	sign of median per-pixel skew of dV/dt, baseline-corrected (121 frames)
Drift / bleaching	baseline change -0.0108, vs beat amplitude -0.0979, slow range 0.162, trend, Spearman -0.356	running median (381 frames) of the tissue-mean raw signal; steps from events (light, rhythm change) and depositor normalization or drift removal change or erase the baseline; bleaching cannot be separated from them here
Prior processing	unit range, non integer, nan mask partial, temporal smoothing, spatial smoothing	deposit checks
Dominant cycle by block, frames	0–1000: 29.4, 1000–2000: 28.6, 2000–3000: 28.6, 3000–3800: 25.0

Concern	Severity	Detail
preprocessed deposit	warn	The deposit is not raw camera data: it is documented as background-subtracted, spatially binned, low-pass filtered, drift-removed, and the publication says normalized. Analyses requiring raw fluorescence/counts or unfiltered noise statistics would be misleading.
polarity transformed relative to dye	warn	RH237 normally dims on depolarization, but measured polarity is non-inverted with 7/7 blocks agreeing. The depositor appears to have flipped or transformed the sign; the pipeline should orient from the measured polarity, so this is not expected to make activation analysis wrong if handled.
SNR depends on preprocessing	info	Median SNR is high, but documented temporal filtering and detected temporal smoothing can inflate the SNR estimate by reducing apparent frame-to-frame noise.
reference thresholds provisional	info	No frame-rate inference was needed because the deposit states 1 kHz. Any conclusions from automated processing flags and provisional rhythm/reference-rate tools should be treated as not yet domain-scientist reviewed.

Inspector report 2026-10-27 20:27 UTC, model openai:gpt-5.5, provisional. Median per-pixel SNR over tissue is 18.818067017408147, with p10 = 13.893293967898506 and p90 = 25.936276941781777 over 3000 frames. The SNR tool cautions that temporal smoothing underestimates noise and inflates SNR; that caveat applies because low-pass filtering is documented and temporal smoothing was detected. The tissue mask contains 5216 pixels out of 10240 total pixels, coverage 0.509375. The mask source is a depositor NaN mask in frame 0; frame 0 has 5024 NaN pixels. No stored events were returned, no acquisition log is present, and no detected light transitions or image baseline-step events were returned. Therefore there are no event frames to interpret for this recording. If events are later added, image-only baseline steps should be treated only as fluorescence changes unless a log shows a light transition at the same frame. The tissue-mean slow baseline, measured with a 381-frame running median, changes from 0.4981755316257477 to 0.48741528391838074, a change of -0.010760247707366943, equal to -0.09788043294092134 of the p5–p95 beat amplitude. Slow baseline range is 0.1622154712677002 and Spearman trend is -0.3557674750723145. Because the deposit documents drift removal and normalization, residual bleaching cannot be separated from preprocessing effects here.

Range checks

Metric	Segment	Value at Run Setting	Cited Range	Status
[no critic verdict for this run]

Compare with run 42e2603b

A: this run, code 701ee65, None workers. B: run 42e2603b, 2026-10-27 02:33 UTC, code da0b6c7, None workers. 34 stored values differ.

File	A	B	Same	How
frames/voltage	[none]	[none]	[not comparable]	recorded sha256
frames/phase	[none]	[none]	[not comparable]	recorded sha256
frames/maps	[none]	[none]	[not comparable]	recorded sha256
movie.mp4	6820976	6820976	yes	size in bytes only; frames not compared

Stored Value	A	B
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metrics.persistent_rotors	138	[absent]
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metrics.segments.window.persistent_rotors	138	[absent]
filter_params.window.illumination	None	[absent]
filter_params.window.illumination_on	[absent]	None
filter_params.window.split_event	None	[absent]
sensitivity.grid[0].segments.window.persistent_rotor_durations	[{'end': 259, 'start': 200, 'charge': -1, 'lifetime_cycles': 2.07, 'lifetime_frames': 60, 'frames_in_segment': 60}, {'end': 242, 'start': 201, 'charge': 1, 'lifetime_cycles': 1.45, 'lifetime_frames': 42, 'frames_in_segment': 42}, {'end': 233, 'start': 203, 'charge': -1, 'lifetime_cycles': 1.07, 'lifetime_frames': 31, 'frames_in_segment': 31}, {'end': 321, 'start': 210, 'charge': 1, 'lifetime_cycles': 3.86, 'lifetime_frames': 112, 'frames_in_segment': 112}, {'end': 241, 'start': 213, 'charge': -1, 'lifetime_cycles': 1.0, 'lifetime_frames': 29, 'frames_in_segment': 29}, {'end': 275, 'start': 220, 'charge': -1, 'lifetime_cycles': 1.93, 'lifetime_frames': 56, 'frames_in_segment': 56}, {'end': 277, 'start': 234, 'charge': 1, 'lifetime_cycles': 1.52, 'lifetime_frames': 44, 'frames_in_segment': 44}, {'end': 278, 'start': 240, 'charge': 1, 'lifetime_cycles': 1.34, 'lifetime_frames': 39, 'frames_in_segment': 39}, {'end': 285, 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sensitivity.grid[1].segments.window.persistent_rotors	126	[absent]
sensitivity.grid[2].segments.window.persistent_rotor_durations	[{'end': 420, 'start': 200, 'charge': -1, 'lifetime_cycles': 7.62, 'lifetime_frames': 221, 'frames_in_segment': 221}, {'end': 355, 'start': 200, 'charge': 1, 'lifetime_cycles': 5.38, 'lifetime_frames': 156, 'frames_in_segment': 156}, {'end': 271, 'start': 225, 'charge': -1, 'lifetime_cycles': 1.62, 'lifetime_frames': 47, 'frames_in_segment': 47}, {'end': 367, 'start': 286, 'charge': -1, 'lifetime_cycles': 2.83, 'lifetime_frames': 82, 'frames_in_segment': 82}, {'end': 394, 'start': 328, 'charge': -1, 'lifetime_cycles': 2.31, 'lifetime_frames': 67, 'frames_in_segment': 67}, {'end': 412, 'start': 334, 'charge': 1, 'lifetime_cycles': 2.72, 'lifetime_frames': 79, 'frames_in_segment': 79}, {'end': 650, 'start': 356, 'charge': 1, 'lifetime_cycles': 10.17, 'lifetime_frames': 295, 'frames_in_segment': 295}, {'end': 391, 'start': 363, 'charge': 1, 'lifetime_cycles': 1.0, 'lifetime_frames': 29, 'frames_in_segment': 29}, {'end': 421, 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sensitivity.grid[2].segments.window.persistent_rotors	89	[absent]
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sensitivity.grid[3].segments.window.persistent_rotors	171	[absent]
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sensitivity.grid[4].segments.window.persistent_rotors	138	[absent]
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sensitivity.grid[8].segments.window.persistent_rotors	102	[absent]
sensitivity.trackers[0].segments.window.persistent_rotor_durations	[{'end': 267, 'start': 200, 'charge': -1, 'lifetime_cycles': 2.34, 'lifetime_frames': 68, 'frames_in_segment': 68}, {'end': 274, 'start': 200, 'charge': -1, 'lifetime_cycles': 2.59, 'lifetime_frames': 75, 'frames_in_segment': 75}, {'end': 354, 'start': 200, 'charge': 1, 'lifetime_cycles': 5.34, 'lifetime_frames': 155, 'frames_in_segment': 155}, {'end': 232, 'start': 203, 'charge': -1, 'lifetime_cycles': 1.03, 'lifetime_frames': 30, 'frames_in_segment': 30}, {'end': 354, 'start': 293, 'charge': -1, 'lifetime_cycles': 2.14, 'lifetime_frames': 62, 'frames_in_segment': 62}, {'end': 326, 'start': 296, 'charge': -1, 'lifetime_cycles': 1.07, 'lifetime_frames': 31, 'frames_in_segment': 31}, {'end': 328, 'start': 298, 'charge': 1, 'lifetime_cycles': 1.07, 'lifetime_frames': 31, 'frames_in_segment': 31}, {'end': 386, 'start': 326, 'charge': -1, 'lifetime_cycles': 2.1, 'lifetime_frames': 61, 'frames_in_segment': 61}, {'end': 405, 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sensitivity.trackers[0].segments.window.persistent_rotors	108	[absent]
sensitivity.trackers[1].segments.window.persistent_rotor_durations	[{'end': 293, 'start': 200, 'charge': -1, 'lifetime_cycles': 3.24, 'lifetime_frames': 94, 'frames_in_segment': 94}, {'end': 274, 'start': 200, 'charge': -1, 'lifetime_cycles': 2.59, 'lifetime_frames': 75, 'frames_in_segment': 75}, {'end': 418, 'start': 200, 'charge': 1, 'lifetime_cycles': 7.55, 'lifetime_frames': 219, 'frames_in_segment': 219}, {'end': 274, 'start': 242, 'charge': 1, 'lifetime_cycles': 1.14, 'lifetime_frames': 33, 'frames_in_segment': 33}, {'end': 475, 'start': 293, 'charge': -1, 'lifetime_cycles': 6.31, 'lifetime_frames': 183, 'frames_in_segment': 183}, {'end': 326, 'start': 296, 'charge': -1, 'lifetime_cycles': 1.07, 'lifetime_frames': 31, 'frames_in_segment': 31}, {'end': 418, 'start': 326, 'charge': -1, 'lifetime_cycles': 3.21, 'lifetime_frames': 93, 'frames_in_segment': 93}, {'end': 405, 'start': 355, 'charge': 1, 'lifetime_cycles': 1.76, 'lifetime_frames': 51, 'frames_in_segment': 51}, {'end': 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sensitivity.trackers[1].segments.window.persistent_rotors	138	[absent]
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sensitivity.trackers[2].segments.window.persistent_rotors	217	[absent]
pipeline.params.window.illumination	None	[absent]
pipeline.params.window.illumination_on	[absent]	None
pipeline.params.window.split_event	None	[absent]